PUBLICATIONS

Last updated at 2017.03.18

 

 

Peer-reviewed articles

 (2017)


121) Abdur Rahim Khan, Muhammad Waqas, Ihsan Ullah, Abdul Latif Khan, Muhammad Aaqil Khan, In-Jung Lee, Jae-Ho Shin. Culturable endophytic fungal diversity of cadmium hyperaccumulator Solanum nigrum L. and their role in enhancing phytoremediation. Environ & Exp Botany, 2017 Mar 17; 135:126-35

120) Abdur Rahim Khan, Chang Eon Park, Gun-Seok Park, Young-Jin Seo, Jai-Hyun So, and Jae-Ho Shin. The whole chloroplast genome sequence of black nightshade plant (Solanum nigrum). Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Mar, 28(2):169-170 

119) Abdur Rahim Khan, Gun-Seok Park, Sajjad Asaf, Sung-Jun Hong, Byung Kwon Jung, Jae-Ho Shin. Complete genome analysis of Serratia marcescens RSC-14: A plant growth-promoting bacterium that alleviates cadmium stress in host plants. PLoS one, (2017) Feb 10, 12(2) e0171534

118) Abdur Rahim Khan, Ihsan Ullah, Muhammad Waqas, Gun-Seok Park, Abdul Latif Khan, Sung-Jun Hong, Rehman Ali, Byung Kwon Jung, Chang Eon Park, Shafiq Ur-Rehman, In-Jung Lee, Jae-Ho Shin. Host plant growth promotion and cadmium detoxification in Solanum nigrum, mediated by endophytic fungi. Ecotoxicology and Environmental Safety 136 (2017): 180-188.

117) Chang Eon Park*, Gun-Seok Park*, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, and Jae-Ho Shin. The complete mitochondrial genome of Kichulchoia multifasciata (Teleostei, Cypriniformes, Cobitidae), Mitochondrial DNA A DNA Mapp Seq Anal. 28(1) 119-120 * These two authors contributed equally to this work

116) Abdul Latif Khan, Ahmed Al-Harrasi , Sajjad Asaf, Chang Eon Park, Gun-Seok Park, Abdur Rahim Khan, In-Jung Lee, Ahmed Al-Rawahi, Jae-Ho Shin.  The First Chloroplast Genome Sequence of Boswellia sacra, a Resin-Producing Plant in Oman. PLoS One. 2017 Jan 13;12(1):e0169794 

115) Jung, Byung Kwon, Abdur Rahim Khan, Sung-Jun Hong, Gun-Seok Park, Yeong-Jun Park, Chang Eon Park, Hwang-Ju Jeon, Sung-Eun Lee, and Jae-Ho Shin. "Genomic and phenotypic analyses of Serratia fonticola strain GS2: a rhizobacterium isolated from sesame rhizosphere that promotes plant growth and produces N-acyl homoserine lactone." Journal of Biotechnology 241 (2017): 158-162. 

114) Sung-Jun Hong, Chang Eon Park, Gun-Seok Park, Min-Chul Kim, Byung Kwon Jung and Jae-Ho Shin. Draft genome sequence of sulfur-reducing archaeon Thermococcus thioreducens  DSM 14981T. Brazilian Journal of Microbiology. (2017) 48: 3-4  

113) Gun-Seok Park, Sung-Jun Hong, Seulki Park, Hyewon Jin, Sang-Jae Lee, Jae-Ho Shin and Han-Seung Lee. Draft genome sequence of alcohol-tolerant bacteria Pediococcus acidilactici strain K3. Brazilian Journal of Microbiology. (2017) 48: 1-2  

(2016)

112) Chang Eon Park*, Gun-Seok Park*, Yunyoung Kwak, Min-Chul Kim, Kgu-Hwan Kim, Hee heon Park and Jae-Ho Shin. The complete mitochondrial genome sequence of Squalidus japonicus coreanus (Teleostei, Cypriniformes, Cyprinidae). Mitochondrial DNA. 27(5):3723-3724

111) Chang Eon Park*, Gun-Seok Park*, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, In-Jung Lee and Jae-Ho Shin. Complete mitochondrial genome of the Korean endemic species Microphysogobio yaluensis (Teleostei, Cypriniformes, Cyprinidae). Mitochondrial DNA Part A, 27(5): 3557-3559. 

110) Chang Eon Park*, Gun-Seok Park*, Yunyoung Kwak, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yeong-Jun Park, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, In-Jung Lee and Jae-Ho Shin. Complete mitochondrial genome of the endemic species Korean aucha perch Coreoperca herzi (Teleostei, Centrarchiformes, Sinipercidae). Mitochondrial DNA Part A, 27(5): 3493–3495.  2016. 09. * These two authors contributed equally to this work

109) Chang Eon Park*, Gun-Seok Park*, Yunyoung Kwak, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yung-Jun Park, Jong-Guk Kim, Hee Cheon Park and Jae-Ho Shin. Complete mitochondrial genome of Cygnus olor (Aves, Anseriformes, Anatidae). Mitochondrial DNA Part A, 27(5):3442-3443.  2016. 09. * These two authors contributed equally to this work.

108) Kwak, Yunyoung, Gun-Seok Park, and Jae-Ho Shin. High quality draft genome sequence of the type strain of Pseudomonas lutea OK2T, a phosphate-solubilizing rhizospheric bacterium. Standards in Genomic Sciences 11(51) 2016. 2016. 08.23. 1944-3277

107) Kwak, Yunyoung, Qing X. Li, and Jae-Ho Shin. Draft genome sequence of Mycobacterium rufum JS14T, a polycyclic-aromatic-hydrocarbon-degrading bacterium from petroleum-contaminated soil in Hawaii. Standards in Genomic Sciences 11(47) 2016. 2016. 08. 02. 1944-3277

106) Chang Eon Park*, Gun-Seok Park*, Yunyoung Kwak, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yung-Jun Park, Jong-Guk Kim, Hee Cheon Park and Jae-Ho Shin. Complete mitochondrial genome of Cygnus cygnus (Aves, Anseriformes, Anatidae). Mitochondrial DNA Part A, 27(4):2907-8.  2016.07. * These two authors contributed equally to this work. 

105) Abdul Latif Khan, Ahmed Al-Harrasi, Ahmed Al-Rawahi, Zainab Al-Farsi, Aza Al-Mamari, Muhammad Waqas, Sajjad Asaf, Ali Elyassi, Fazal Mabood, Jae-Ho Shin, In-Jung Lee. Endophytic Fungi from Frankincense Tree Improves Host Growth and Produces Extracellular Enzymes and Indole Acetic Acid. PlosOne. June 30, 2016.

104)  Seung-Chul Lee, Hwan-Won Choi, Eeuri Nam, Yun-Hee Noh, Sunhee Lee, Yoo Jin Lee, Gun-Seok Park, Jae-Ho Shin, In-Joong Yoon, Shien-Young Kang, Changhee Lee. Pathogenicity and genetic characteristics associated with cell adaptation of a virulent porcine reproductive and respiratory syndrome virus nsp2 DEL strain CA-2, Veterinary Microbiology (2016) 186, p. 174-188.

103) Sajjad Asaf, Abdul Latif khan; Abdur Rahim Khan; Muhammad Waqas; Sang-Mo Kang; Muhammad Aaqil Khan; Raheem Shahzad; Chang Woo Seo; Jae-Ho Shin; In-Jung Lee. (2016). Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species. PloS one, 11(4), e0152937

102) Mashooq Khan, Abdur Rahim Khan, Jae-Ho Shin and Soo-Young Park. A liquid-crystal-based DNA biosensor for pathogen detection, Scientific Reports (2016) 6, Mar. 03. 

101) Gun-Seok Park, Sung-Jun Hong, Byung Kwon Jung, Changhee Lee, Choi Kyu Park, Jae-Ho Shin. The complete genome sequence of a lactic acid bacterium Leuconostoc mesenteroides ssp. dextranicum strain DSM 20484T, J Biotech. (2016) 219, p. 3 – 4.

100) Yunyoung Kwak and Jae-Ho Shin. First Azospirillum genome from aquatic environments: whole-genome sequence of Azospirillum thiophilum BV-ST, a novel diazotroph harboring a capacity of sulfur-chemolithotrophy from a sulfide spring. Marine genomics (2016) 25, p. 21-24.

99) Gun-Seok Park, Abdur Rahim Khan, Yunyoung Kwak, Sung-Jun Hong, ByungKwon Jung, Jong-Guk Kim, Jae-Ho Shin. An Improved Soil Ball Making Method for the Water Quality Control, Envion. Sci. Pollut. Res (2016) 23:1100-1107 

(2015)

98) Irina Khalmuratova,, Hyun Kim, Yoon-Jong Nam, Yoosun Oh, Min-Ji Jeong, Hye-Rim Choi, Young-Hyun You, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, Hyeokjun Yoon and Jong-Guk Kim. (2015). Diversity and Plant Growth Promoting Capacity of Endophytic Fungi Associated with Halophytic Plants from the West Coast of Korea.Mycobiology, 43(4), 373-383. 

97) Yunyoung Kwak, Jae-Ho Shin. Complete genome sequence of Photorhabdus temperata subsp. thracensis 39-8T, an entomopathogenic bacterium for the improved commercial bioinsecticide. Journal of Biotechnology (2015) 214, p. 115-116.

96) Gun-Seok Park, Sung-Jun Hong, Byung Kwon Jung, Abdur Rahim Khan, Yeong-Jun Park, Chang Eon Park, Ara Lee, Yunyoung Kwak, Yong-Jik Lee, Dong-Woo Lee, Changhee Lee, Choi Kyu Park, Jae-Ho Shin. Complete genome sequence of a keratin-degrading bacterium Chryseobacterium gallinarum strain DSM 27622T isolated from chicken. Journal of Biotechnology. (2015) 211, p. 66-67

95) Yunyoung Kwak, Jae-Ho Shin. Complete genome sequence of Burkholderia pyrrocinia 2327T, the first industrial bacterium which produced antifungal antibiotic pyrrolnitrin. Journal of Biotechnology (2015) 211, p. 3-4

94) Sung-Jun Hong, Gun-Seok Park, Byung Kwon Jung, Abdur Rahim Khan, Yeong-Jun Park, Chang-Hyun Lee, Jae-Ho Shin. Isolation, identification, and characterization of a keratin-degrading bacterium Chryseobacterium sp. P1-3  JABC (2015) 58(3), 247-251

93) Yong-Jik Lee, Haeyoung Jeong, Gun-Seok Park, Yunyoung Kwak, Sang-Jae Lee, Sang Jun Lee, Min-Kyu Park, Ji-Yeon Kim, Hwan Ku Kang, Jae-Ho Shin and Dong-Woo Lee. Genome sequence of a native-feather degrading extremely thermophilic Eubacterium, Fervidobacterium islandicum AW-1. Standards in Genomic Sciences. (2015) 10:71

92) Abdur Rahim Khan, Ihsan Ullah, Muhammad Waqas, Raheem Shahzad, Sung-Jun Hong, Gun-Seok Park, Byung Kwon Jung, In-Jung Lee, Jae-Ho Shin. Plant growth promoting potential of endophytic fungi isolated from Solanum nigrum leaves. World Journal of Microbiology and Biotechnology. 2015 Sep;31(9):1461-6

91)
Khan, A. R., Ullah, I., Khan, A. L., Park, G. S., Waqas, M., Hong, S. J., Jung, B. K., Kwak Y., Lee, I. J., Shin, J. H. (2015). Improvement in phytoremediation potential of Solanum nigrum under cadmium contamination through endophytic-assisted Serratia sp. RSC-14 inoculation. Environmental Science and Pollution Research. 2015 Sep;22(18):14032-42.

90) Byung Kwon Jung, Sang-Dal Kim, Abdur Rahim Khan, Jong-Hui Lim, Chang-Hwan An, Yo-Hwan Kim, Jin Ha Song, Sung-Jun Hong, Jae-Ho Shin. Rhizobacterial Communities and Red Pepper (Capsicum annum) Yield under Different Cropping Systems. International Journal of Agriculture and Biology (2015) 17:734‒740 

89) Sung-Jun Hong, Gun-Seok Park, Abdur Rahim Khan, Byung Kown Jung, Yeong-Jun Park, Na-Kyung Yoo, Changhee Lee, Choi Kyu Park, and Jae-Ho Shin. Draft genome sequence of caprolactam degrading Pseudomonas putida strain SJ3. Genome Announcement. 2015 Jul-Aug; 3(4): e00810-15.

88) Yunyoung Kwak, Jae-Ho Shin. Complete genome sequence of Paenibacillus beijingensis 7188T (=DSM 24997T), a novel rhizobacterium from jujube garden soil. Journal of Biotechnology, 206(2015) 75-76

87) Sung-Jun Hong, Ihsan Ullah,  Gun-Seok Park, Byung Kwon Jung, JungBae Choi, Abdur Rahim Khan, Min-Chul Kim and Jae-Ho Shin. Draft Genome Sequence and Annotation of the Insect Pathogenic Bacterium Xenorhabdus nematophila Strain C2-3, Isolated from Nematode Steinernema carpocapsae in the Republic of Korea, Genome announcement, Volume 3, 1 (2015) e01521-14

86) Ihsan Ullah, Abdul Latif Khan, Liaqat Ali, Abdur Rahim Khan, Muhammad Waqas, Javid Hussain, In-Jung Lee, and Jae-Ho Shin. Benzaldehyde as an Insecticidal, Antimicrobial, and Antioxidant Compound Produced by Photorhabdus temperata M1021, Journal of Microbiology, 2015, Feb. 53(2) 127-133

85) Yunyoung Kwak, Abdur Rahim Khan, Jae-Ho Shin. Genome sequence of Serratia nematodiphila DSM 21420T, a symbiotic bacterium from entomopathogenic nematode. Journal of Biotechnology, Volume 193, 10 January 2015, Pages 137-138

84) Yunyoung Kwak, Byung Kwon Jung, Jae-Ho Shin. Complete genome sequence of Pseudomonas rhizosphaerae IH5T (=DSM 16299T), a phosphate-solubilizing rhizobacteriumfor bacterial biofertilizer. Journal of Biotechnology, Volume 193, 10 January 2015, Pages 1-2

  

(2014)

83) Gun-Seok Park, Ji-Hun Chu, Sung-Jun Hong, Yunyoung Kwak, Abdur Rahim Khan, Byung Kwon Jung, Ihsan Ullah, and Jae-Ho Shin, Complete genome sequence of the caprolactam-degrading bacterium Pseudomonas mosselii SJ10 isolated from wastewater of a nylon 6 production plant. Journal of Biotechnology, (2014) 192: 263-264

82) Ullah, I., Khan, A. L., Ali, L., Khan, A. R., Waqas, M., Lee, I. J., & Shin, J. H. (2014). An Insecticidal Compound Produced by an Insect-Pathogenic Bacterium Suppresses Host Defenses through Phenoloxidase Inhibition. Molecules, 19(12), 20913-20928. 2014.12.12. 

81) Gun-Seok Park, Sung-Jun Hong, Chang-Hyun Lee, Abdur Rahim Khan, Ihsan Ullah, Byung Kwon Jung, JungBae Choi, Yunyoung Kwak, Chang-Gi Back, Hee-Young Jung, Jae-Ho Shin, Draft Genome Sequence of Chryseobacterium sp. P1-3, a Keratinolytic Bacterium Isolated from the Poultry Waste. Genome Announcement, (2014)

80) Susan Krueger, Jae-Ho Shin, Joseph E. Curtis, Kenneth A. Rubinson and Zvi Kelman. The solution structure of full-length dodecameric MCM by SANS and molecular modeling. Proteins: Structure, Function, and Bioinformatics (2014) 10:2364

79) Yunyoung Kwak, Gun-Seok Park, Sung-Eun Lee, Qing X. Li, Jae-Ho Shin. Genome sequence of Mycobacterium aromaticivorans JS19b1T, a novel isolate from Hawaiian soil. Journal of Biotechnology (2014) 

78) Abdur Rahim Khan · Ihsan Ullah · Abdul Latif Khan · Sung-Jun Hong · Muhammad Waqas · Gun-Seok Park · Yunyoung Kwak · JungBae Choi · Byung-Kwon Jung · Man Park · In-Jung Lee · Jae-Ho Shin.  Phytostabilization and Physicochemical Responses of Korean Ecotype Solanum nigrum L. to Cadmium Contamination. Water, Air, & Soil Pollution (2014) 225:2147

77) Abdul Khan, Jae-Ho Shin, Hee-Young Jung, In-Jung Lee,. Regulations of capsaicin synthesis in Capsicum annuum L by Penicillium resedanum LK6 during drought conditions. Scientia Horticulturae  (2014) 175: 167-173

76) Ihsan Ullah, Abdur Rahim Khan, Byung Kwon Jung, Abdul Latif Khan, In-Jung Lee and Jae-Ho Shin. Gibberellins synthesized by the entomopathogenic bacterium, Photorhabdus temperata M1021 as one of the factors of rice plant growth promotion. Journal of Plant Interactions (2014) Vol 9. issue 1

75)  Ihsan Ullah, Eun-Kyung Jang, Min-Sung Kim, Jin-Ho Shin, Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, Byung-Kwon Jung, JungBae Choi, YeongJun Park, Yunyoung Kwak, Jae-Ho Shin. Identification and characterization of the insecticidal toxin “makes caterpillars floppy” in Photorhabdus temperata M1021 using a cosmid library. Toxins(2014) 6(7) 2024-2040

74) Hyun Kim, Young-Hyun You, Hyeokjun Yoon, Yeonggyo Seo, Ye-Eun Kim, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, and Jong-Guk Kim. Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast. Mycobiology. 2014 Jun;42(2):100-108 

73) Sung-Jun Hong, Yun-Ha Lee, Abdur Rahim Khan, Ihsan Ullah, Changhee Lee, Choi Kyu Park and Jae-Ho Shin. Cloning, expression, and characterization of thermophilic L-asparaginase from Thermococcus kodakarensis KOD1. Journal of Basic Microbiology (2014).

72) Sunhee Lee, Gun-Seok Park, Jae-Ho Shin, and Changhee Lee, Complete Genome Sequence of New Variant of Porcine Epidemic Diarrhea Virus from South Korea. 2014.05.29. Genome Announcement

71) Ramalingam Radhakrishnan, Jae-Ho Shin, Yeon-Sik Choo, Jong-Guk Kim and In-Jung Lee. Studies on toxic effects of nitrogenous compound, putrescine and spermine on cucumber plant growth. Journal of Environmental Biology (2014) p. 247-251

70) Yoon-Ha Kim, Abdul Latif Khan, Duk-Hwan Kim, Seung-Yeol Lee, Kyung-Min Kim, Muhammad Waqas, Hee-Young Jung, Jae-Ho Shin, Jong-Guk Kim and In-Jung Lee. Silicon mitigates heavy metal stress by regulating P-type heavy metal ATPases, Oryza sativa low silicon genes, and endogenous phytohormones. BMC plant biology (2014) 14(13)

69) Yunyoung Kwak, Sung-Eun Lee, Jae-Ho Shin. Expression of organophosphorus hydrolase in Escherichia coli for use as whole-cell biocatalyst. Journal of Molecular Catalysis B: Enzymatic (2014) 99 169-175

 

(2013)

68) Yu Na Lee, Choi-Kyu Park, Seong-Hee Kim, Du Sik Lee, Jae-Ho Shin and Changhee Lee. Characterization in vitro and in vivo of a novel porcine parainfluenza virus 5 isolate in Korea. Virus research (2013) 178(2) 423-429

67) Sang-Jae Lee, Yong-Jik Lee, Gun-Seok Park, Byoung-Chan Kim, Sang Jun Lee, Jae-Ho Shin, and Dong-Woo Lee. Draft Genome Sequence of a strictly anaerobic and extremely thermophilic bacterium Caldanaerobacter yonseiensis" Genome Announcement (2013) vol. 1 no. e00923-13

66) Abdul Latif Khan, Muhammad Waqas, Abdur Rahim Khan, Javid Hussain, Sang-Mo Kang, Syed Abdullah Gilani, Muhammad Hamayun, Jae-Ho Shin, Muhammad Kamran, Ahmed Al-Harrasi, Byung-Wook Yun, Muhammad Adnan, In-Jung Lee. Fungal endophyte Penicillium janthinellum LK5 improves growth of ABA-deficient tomato under salinity. World J Microbial Biotechnol (2013)

65) Gun-Seok Park,  Abdur Rahim Khan, Sung-Jun Hong, Eun-Kyung Jang, Ihsan Ullah, Byung Kwon Jung, JungBae Choi, Na-Kyung Yoo, Keun-Joon Park and Jae-Ho Shin. Draft Genome Sequence of Entomopathogenic Bacterium Photorhabdus temperata Strain M1021, Isolated from Nematodes. Genome announcements (2013) 1(5)

64) Yunyoung Kwak, In-Koo Rhee, Jae-Ho Shin. Expression pattern of recombinant organophosphorus hydrolase from Flavobacterium sp. ATCC 27551 in Escherichia coli. Appl Microbial Biotechnol (2013) 97(18) 8097-8105

63) Yunyoung Kwak, In-Koo Rhee, Jae-Ho Shin. Application of Biofilm-Forming Bacteria on the Enhancement of Organophosphorus Fungicide Degradation. Bioremediation Joural (2013) 17(3) 173-181

62) Myeongeun Choe, Sung-Jun Hong, Jong-Hui Lim, Yunyoung Kwak, Chang-Gi Back, Hee-Young Jung, In-Jung Lee, Jae-Ho Shin.  Korean Paddy Soil Microbial Community Analysis Method Using Denaturing Gradient Gel Electrophoresis. J Appl Biol Chem (2013) 56(2), 95-100

61) Ihsan Ullah, Abdur Rahim Khan, Gun-Seok Park, Jong-Hui Lim, Muhammad Waqas, In-Jung Lee and Jae-Ho Shin. Analysis of phytohormones and phosphate solubilization in Photorhabdus spp. Food Sci.Biotechnol (2013) 22(S) 25-31

 

(2012)

60) Yunyoung Kwak, Sang-Jun Kim, In-Koo Rhee, Jae-Ho Shin. Application of Quantitative Real-Time Polymerase Chain Reaction (PCR) on the Assessment of Organophosphorus Compound Degradation in in situ Soil. J Korean Soc Appl Biol Chem (2012)

59) Miae Kim, Young-Hyun You, Hyeokjun Yoon, Hyun Kim, Yeonggyo Seo, Irina Khalmuratova, Jae-Ho Shin, In-Jung Lee, Yeon-Sik Choo and Jong-Guk Kim. Genetic Diversity of Endophytic Fungal Strains Isolated from the Roots of Coastal Plants in Ulleung Island for Restoration of Coastal Ecosystem. Journal of Life Science 2012 Vol. 22. No. 10. 1384~1391

58) Jang, Eun-Kyung, Ihsan Ullah, Jong-Hui Lim, In-Jung Lee, Jong-Guk Kim, and Jae-Ho Shin. Physiological and Molecular Characterization of a Newly Identified Entomopathogenic Bacteria, Photorhabdus temperata M1021. J. Microbiol. Biotechnol. First Published Online (2012)22(12) 1605-1612

57) Young-Hyun You, Hyeokjun Yoon, Sang-Mo Kang, Ju-Ri Woo, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, Jong-Guk Kim, Cadophora malorum Cs-8-1 as a new fungal strain producing gibberellins isolated from Calystegia soldanella. Journal of Basic Microbiology.  (2012) 52, 1–5  2012.09.07

56) Young-Hyun You, Hyeokjun Yoon, Sang-Mo Kang, Jae-Ho Shin, Yeon-Sik Choo, In-Jung Lee, Jin-Man Lee, and Jong-Guk Kim. Fungal Diversity and Plant Growth Promotion of Endophytic Fungi from Six Halophytes in Suncheon Bay J. Microbiol. Biotechnol. (2012) 22(11), 1550–1557  July 17.

55) Yunyoung Kwak · Jang-Eok Kim · In-Jung Lee · Jong-Guk Kim ·In-Koo Rhee · Jae-Ho Shin. Biodegradation of Tolclofos-methyl by Extracellular Secreted Organophosphorus Hydrolase in Recombinant Escherichia coli. J Korean Soc Appl Biol Chem (2012) 55, 377-384.

54) Gun-Seok Park · Eun-Kyung Jang · Min-Sung Kim · Jae-Ho Shin. Insecticidal Activity and Stability by Freeze-drying of Entomopathogenic Bacteria, Photorhabdus temperata M1021. J Appl Biol Chem (2012) 55(2), 123-127 

53) Sung-Jun Hong, Ihsan Ullah, Gun-Seok Park, Changhee Lee, and Jae-Ho Shin. Overexpression and Characterization of Recombinant Glutamate Decarboxylase from Thermococcus kodakaraensis KOD1. J. Korean Soc. Appl. Biol. Chem. 2012. 55, 213-218.

 

(2011)

52) Myeongeun Choe, In-Jung Lee, Jae-Ho Shin. Assessment of Korean paddy soil microbial community structure by use of quantitative real-time PCR assays. Korean J Environ. Agric. 2011. Dec 30, 30(4): 367-376.

51) Young-Hyun You, Hyeokjun Yoon, Ju-Ri Woo, Yeounggyo Seo, Jae-Ho Shin, Yeon-Sik Choo, In-Jung Lee, Jong-Guk Kim. Plant Growth Promotion Activity of Endophytic Fngi Isolated from the Roots of Calystegia soldanella. Korean J. Microbiol. Biotechnol. 2011. Dec 28, 39(4): 324-329.

50. S. Krueger, J.-H. Shin, S. Raghunandan, J. E. Curtis, and Z. Kelman. Atomistic Ensemble Modeling and SANS of Intrinsically Disordered Protein Complexes: Applied to MCM. Biophys J. 2011. Dec 21: 2999-3007

49. Abdul Latif Khan, Muhammad Hamayun, Ramalingam Radhakrishnan, Muhammad Waqas, Sang-Mo Kang, Yoon-Ha Kim, Jae-Ho Shin, Yeon-Sik Choo, Jong-Guk Kim and In-Jung Lee. Mutualistic association of Paecilomyces formosus LHL10 offers thermotolerance to Cucumis sativus. Antonie van Leeuwenhoek Journal of Microbiology. 2012. 101: 267-279

48. Eun-Kyung Jang, Ihsan Ullah, Min-Sung Kim, Kyeong-Yeoll Lee, Jae-Ho Shin. Isolation and characterization of the entomopathogenic bacterium, Photorhabdus temperata producing a heat stable insecticidal toxin. Jounal of plant diseases and protection. 2011. 118(5): 178-184

47. Young-Hyun You, Hyeokjun Yoon, Gil Seong Lee, Ju-Ri Woo, Jae-Ho Shin, In-Jung Lee, Soon-Ok Rim, Yeon-Sik Choo, Jong-Guk Kim. Diversity and Plant Growth-Promotion of Endophytic Fungi Isolated from the Roots of Plants in Dokdo Islands.  Journal of Life Science 2011. Jul 21(7): 923-1066

46. Yam Kumar Shrestha, Eun-Kyung Jang, Yeon-Su Yu, Mijo Kwon, Jae-Ho Shin and Kyeong-Yeoll Lee. Oral toxicity of symbiotic bacteria Photorhabdus spp. against immature stages of insects. Journal of Asia-Pacific Entomology. 2010, Oct, 25.

45. Catherine W. Rico, Mi Young Kang, Jae-Ho Shin, and In Chul Um. Cholesterol-lowering Action and Antioxidative Effects of Microbial Gum in C57BL/6N Mice Fed a High Fat Diet. Biotechnol. Bioprocess Eng. 2011, Mar 16(1): 167-172.

 

(2010)

44. Kab-Sik Shin, Young-Hwan Jeon, Hyo-Young Kim, Jung-In Hwang, Sangman Lee, Jae-Ho Shin and Jang-Eok Kim. Degradation of Fungicide Tolclofos-methyl by Chemical Treatment. Korean J Environ. Agric. 2010. Dec 30, 29(4): 396-401.

43. Yunyoung Kwak, Kab-Sik Shin, Sang-Man Lee, Jang-Eok Kim, In-Koo Rhee and Jae-Ho Shin. Biodegradation of Fungicide Tolclofos-methyl by Sphingomonas sp. 224. Korean J Environ. Agric. 2010. Dec 30, 29(4): 388-395.

42. Hyun-Ho Kim, Jai-Hyun So, Jae-Ho Shin, and In-Koo Rhee. Role of xylR Gene on the Construction of Xylose-Inducible Expression Vectors Using xylF Promoter of Escherichia coli. J. Korean Soc. Appl. Biol. Chem. 2010. Dec 30, 53(6): 790-797.

41. Jai-Hyun So, Won-Chan Kim, Jae-Ho Shin, Choon-Bal Yu and In-Koo Rhee. Purification and characterization of a β-glucosidase capable of hydrolyzing soybean isoflavone glycosides from Pichia guilliermondii K123-1. Food Science and Biotechnology2010, August, 8. 19(5): 1373-1379 

40JANG Eun-KyungSHIN Jae-Ho. Insecticidal Toxin and Research Trends of Photorhabdus, Entomopathogenic Bacteria. Korean Society for Microbiology and Biotechnology. 2010, 38 (2): 117-123.

39. Muhammad Hamayun, Sumera Afzal Khan, Abdul Latif Khan, Jae-Ho Shin, Bashir Ahmad, Dong-Hyun Shin and In-Jung Lee. Exogenous Gibberellic Acid Reprograms Soybean to Higher Growth and Salt Stress Tolerance. J. Agric. Food Chem. 2010May 28, 58 (12): 7226–7232

 

(2009)

38. Zaw Win Min, Tae-Hwa Kim, Jae-Ho Shin, Sang-Man Lee, and Jang-Eok Kim. Accelerated Effect of Ferric Salts on Degradation of Thiophosphate Fungicide, Tolclofos-methyl by Zerovalent Iron. J. Kor. Soc. Appl. Biol. Chem, 2009, Dec 30, 52(6): 681-687.

37. Haim Yoon, Jang-Eok Kim, Jae-Ho Shin, Jeong Hoe Kim and Sangman Lee. Effect of Phytochelatin Synthase Expression on Degradation of Fungicide Tolclofosmethyl in Mutant Plant and Transformed yeast. Korean Journal of Environmental Agriculture, 2009, Dec 30; 28(4): 409-411.

36. Jai-Hyun So, Duk-Jin Kim, Jae-Ho Shin, Choon-Bal Yu and In-Koo Rhee. Isolation and Characterization of Bacillus cereus A-139 Producing Auxin from East Coast Sand Dunes. Korean Journal of Environmental Agriculture, 2009, Dec 30; 28(4): 447-452.

35. Won-Chan Kim, Jai-Hyun So, Sang-In Kim, Jae-Ho Shin, Kyung-Sik Song, Choon-Bal Yu, Yung-Hee Kho, and In-Koo Rhee. Isolation, Identification, and Characterization of Pichia guilliermondii K123-1 and Candida fermentati SI, Producing Isoflavone β-Glycosidase to Hydrolyze Isoflavone Glycoside Efficiently, from the Korean Traditional Soybean Paste. J. Appl. Biol. Chem., 2009, Dec; 52(4): 163-169.

34. Jin-Ho Shin, Eun-Jung Kim, Sun-Ji Park, In-Koo Rhee, and Jae-Ho Shin. Isolation and Production of Antibiotic Substance from Streptomyces sp. S-1110 Antagonistic to Multiple Apple Mold Diseases. Korean Journal of Environmental Agriculture, 2009, Sep 30; 28(3): 289-294.

33. Jae-Ho Shin, Jun-Ho Choi, Oh-Seuk Lee, Young-Mok Kim, Dong-Suk Lee, Yun-Young Kwak, Won-Chan Kim, and In-Koo Rhee. Thermostable Xylanase from Streptomyces thermocyaneoviolaceus for Optimal Production of Xylooligosaccharides. Biotehcnolology and Bioprocess Engineering, 2009, Aug 31; 14: 391-399.

32. Martin Samuels, Gaurav Gulati, Jae-Ho Shin, Rejoice Opara, Elizabeth McSweeney, Matt Sekedat, Stephen Long, Zvi Kelman, and David Jeruzalmi. A biochemically active MCM-like helicase in Bacillus cereus. Nucleic Acids Res., 2009 July; 37(13): 4441–4452

31. Michiyo Tanikawa, Tae Shin Kim, Kiyoshi Okuda, Zae Young Ryoo, Soo Bong Park, Jae Ho Shin, Choon Keun Park, and Dong Seok Lee. Cell-type specificity of interleukins 1α and 1β on prostaglandin and plasminogen activator production in bovine endometrial cells, Animal Reproduction Science, 2009, Aug 01; 114: 32-42.

30. Lam Hoang, Gil-Jae Joo, Won-Chan Kim, Eun-Ju Yang, Sang-In Kim, Sang-Man Lee, Jae-Ho Shin, In-Koo Rhee, and Kyung-Sik Song. Growth Inhibitors of Lettuce Seedlings from Curvibacter sp. GA75-1 Kor. J. Hort. Sci. Technol. 2009, Jun 1; 27(2):319-324.

29. Jae-Ho Shin, Gun-Young Heo and Zvi Kelman. The Methanothermobacter thermautotrophicus MCM helicase is active as a hexameric ring. Journal of Biological Chemistry, 2009, Jan 2; 284(1) 540-546. 

 

(2008)

28. Jae-Ho Shin, Yunyoung Kwak, Won-Chan Kim, Jai-Hyun So, Hyun-Soo Shin, Jong-Woo Park, Tae-Hwa Kim, Jang-Eok Kim, and In-Koo Rhee. Isolation of endosulfan degrading bacteria and their degradation characteristics. Korean Journal of Environmental Agriculture, 2008, Sep 30; 27(3) 292-297

27. Jae-Ho Shin. Helicase translocation assay method using avidin and biotinylated nucleotides. Biotechnology Letters, 2008, Nov.01, 30(11):2007-2012

26. Andrea Farina, Jae-Ho Shin, Do-Hyung Kim, Vladimir P. Bermudez, Zvi Kelman, Yeon-Soo Seo, and Jerard Hurwitz.  Studies with the human cohesin establishment factor, ChlR1; its association with CTF18-RFC and FEN1. Journal of Biological Chemistry, 2008, Jul 25; 283(30) 20925-20936.

25. Jae-Ho Shin, Gun-Young Heo, and Zvi Kelman. The Methanothermobacter thermautotrophicus Cdc6-2 proteins, the putative helicase  loader, dissociate the MCM helicase. Journal of Bacteriology, 2008, June 190(11): 4091-4094.

24. Gun-Young Heo, Won-Chan Kim, Gil-Jae Joo, Yun-Young Kwak, Jae-Ho Shin, Dong-Hyun Roh, Heui-Dong Park, and In-Koo Rhee. Deletion of xylR Gene Enhances Expression of Xylose Isomerase in Streptomyces lividans TK24. Journal of Microbiology and Biotechnology. 2008. May 28; 18(5): 837-844.

 

(2007)

23. Jeong-Hwa Choi, Wan-Taek Im, Qing-Mei Liu, Jae-Soo Yoo, Jae-Ho Shin, Sung-Keun Rhee and Dong-Hyun Roh. Planococcus donghaensis sp. nov., a starchdegrading bacterium isolated from the East Sea, South Korea. International Journal of Systematic and Evolutionary Microbiology, 2007, Nov; 57:2645–2650.

22. Young-Mog Kim, Kunbawui Park, Won-Chan Kim, Jae-Ho Shin, Jang-Eok Kim, Heui-Dong Park and In-Koo Rhee. Cloning and Chracterization of a Catechol-Degrading Gene Cluster from 3,4-dichloroaniline Degrading Bacterium Pseudomonas sp. KB35B. Journal of Agricultural and Food Chemistry, 2007 Jun; 55:4722-4727

21. Jae-Ho Shin, Thomas J. Santangelo, Yunwei Xie, John N. Reeve and Zvi Kelman. Archaeal Minichromosome Maintenance (MCM) Helicase Can Unwind DNA Bound by Archaeal Histones and Transcription Factors. Journal of Biological Chemistry. 2007 Feb 16; 282(7):4908-15  

 

(Before KNU until 2006)

20. Jae-Ho Shin and Zvi Kelman. DNA unwinding assay using streptavidin-bound oligonucleotides. BMC Molecular Biology. 2006 Nov 28; 7:43 

19. Gyri Teien Haugland*, Jae-Ho Shin*, Nils-Kare Birkeland and Zvi Kelman. Stimulation of MCM helicase activity by a Cdc6 protein in the archaeon Thermoplasma acidophilum. Nucleic Acids Research. 2006 Nov 15; 34(21):6337-44. * These two authors contributed equally to this work  

18. Jae-Ho Shin, and Zvi Kelman. The replicative helicases of bacteria, archaea and eukarya can unwind RNA-DNA hybrid substrates. Journal of Biological Chemistry. 2006 Sep 15; 281(37):26914-26921  

17. Jae-Ho Shin, Rachel Mauro, Eugene Melamud and Rajesh Kasiviswanathan. Cloning and partial characterization of the Methanococcoides burtonii minichromosome maintenance (MCM) helicase. Bios. 2006 May; 77(2):37-41

16. Rajesh Kasiviswanathan, Jae-Ho Shin and Zvi Kelman. DNA Binding by the Methanothermobacter thermautotrophicus Cdc6 Protein Is Inhibited by the Minichromosome Maintenance Helicase. Journal of Bacteriology. 2006 Jun; 188(12):4577-4580  

15. Jun-Ho Choi, Oh-Seuk Lee, Jae-Ho Shin, Yun-Young Kwak, Young-Mog Kim and In-Koo Rhee. Thermostable Xylanase Encoded by xynA of Streptomyces thermocyaneoviolaceus: Cloning, Purification, Characterization and Production of Xylooligosaccharides. Journal of Microbiology and Biotechnology. 2006 Jan 28; 16(1) 57-63  

14. Rajesh Kasiviswanathan, Jae-Ho Shin and Zvi Kelman. Interaction between the archaeal Cdc6 and MCM proteins modulate their biochemical properties. Nucleic Acids Research. 2005 Sep 8; 33(15):4940-50  

13. Gil-Jae Joo, Jae-Ho Shin, Gun-Young Heo, Young-Mog Kim and In-Koo Rhee. Molecular Cloning and Expression of a Thermostable Xylose (Glucose) Isomerase Gene, xylA, from Streptomyces chibaensis J-59. Journal of Microbiology. 2005 Feb; 43(1):34-37  

12. Yen-Ju Chen, Xiong Yu, Rajesh Kasiviswanathan, Jae-Ho Shin, Zvi Kelman, and Edward H. Egelman. Structural polymorphism of Methanothermobacter thermautotrophicus MCM. Journal of Molecular Biology. 2005 Feb 18; 346(2):389-94 

11. Jae-Ho Shin, John N. Reeve and Zvi Kelman. Use of a restriction enzyme-digested PCR product as substrate for helicase assays. Nucleic Acids Research. 2005 Jan 13; 33(1):e8  

10. Kap Lim, Elif Sarikaya, Andrey Galkin, Wojciech Krajewski, Sadhana Pullalarevu, Jae-Ho Shin, Zvi Kelman, Andrew Howard, and Osnat Herzberg. Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: a protein with no known sequence homologues. Proteins: Structure, Function, and Bioinformatics. 2004 Aug 15; 56(3):564-71  

9. Rajesh Kasiviswanathan, Jae-Ho Shin, Eugene Merlamud, and Zvi Kelman. Biochemical characterization of the Methanothermobacter thermautotrophicus minichromosome maintenance (MCM) helicase N-terminal domains. Journal of Biological Chemistry. 2004 Jul 2; 279(27):28358-66  

8. Soo-Hyun Lee, Jae-Ho Shin, Jun-Ho Choi, Jong-Woo Park, Jang-Eok Kim, and In-Koo Rhee. Isolation and Chracterization of Chlorothalonil-dissipating Bacteria from Soil. Korean Journal of Microbiology and Biotechnology. 2004 Mar; 32(1):96-100  

7. Jae-Ho Shin, Yun Jiang, Beatrice Grabowski, Jerard Hurwitz, and Zvi Kelman. Substrate requirements for duplex DNA translocation by the eukaryal and archaeal minichromosome maintenance helicases. Journal of Biological Chemistry. 2003 Dec 5; 278(49):49053-62  

6. Jae-Ho Shin, Beatrice Grabowski, Rajesh Kasiviswanathan, Stephen D. Bell, and Zvi Kelman. Regulation of minichromosome maintenance helicase activity by Cdc6. Journal of Biological Chemistry. 2003 Sep 26; 278(39):38059-67  

5. Jae-Ho Shin, Young-Mog Kim, Jong-Woo Park, Jang-Eok Kim, and In-Koo Rhee, Resistance of Saccharomyces cerevisiae to fungicide chlorothalonil. Journal of Microbiology. 2003 Sep; 41(3):219-223  

4. Jae-Ho Shin, Dong-Hyun Roh, Gun-Young Heo, Gil-Jae Joo, and In-Koo Rhee. Purification and Characterization of a Regulatory Protein XylR in the D-xylose Operon from Escherichia coli. Journal of Microbiology and Biotechnology. 2001 Dec; 11(6):1002-1010  

3. Gil-Jae Joo, Jae-Ho Shin, Gun-Young Heo, Yun-Young Kwak, Jun-Ho Choi, and In-Koo Rhee. Purification and Characterization of a Thermostable Xylose (Glucose) Isomerase from Streptomyces chibaensis J-59. Agricultural Chemistry and Biotechnology. 2001; 44:113-118  

2. Seung-Hwan Kim, Oon-Chan Chung, Im-Sun Woo, Jae-Ho Shin, Dong-Hyun Rho, In-Koo Rhee, and Heui-Dong Park. Fermentation and Sporulation Characteristics of Saccharomyces cerevisiae SHY111 Isolated from Korean Traditional Rice Wine. Journal of Microbiology and Biotechnology. 2000; 10:776-783  

1. Heui-Dong Park, Seung-Hwan Kim, Jae-Ho Shin, and In-Koo Rhee. Genetic Analysis of Alcohol Yeasts Isolated from Korean Traditional Liquor by Polymerase Chain Reaction. Journal of Microbiology and Biotechnology. 1999 Dec; 9(6):744-750 

 

Click here to see the full list of articles through the google scholar

 

 

Book Chapters

1. Jae-Ho Shin, Lori Kelman, and Zvi Kelman. DNA replication in thermophiles. In Thermophiles : Biology and Technology at High Temperature ( Frank Robb, Garo Antranikian, Dennis Grogan, and Arnold Driessen eds.) Taylor & Francis CRC Press. 2007. ISBN: 9780849392146 link

2. 주우홍, 신재호 외. 미생물학입문 2판(번역). 월드사이언스, 2009. ISBN: 9788958811411

3. 주우홍, 신재호 외. 미생물학입문 3판(번역). 월드사이언스, 2013. ISBN: 9788958812227 

4. 김병홍, 신재호 외. 미생물생리학 4판. 아카데미서적, 2013. ISBN: 9788976162724

 

Patents (registered only)

1)   신재호, 이인구, 소재현, 김현호. 대장균 유래 xylF 또는 xylA 프로모터 단편을 포함하는 자일로즈 유도성 발현벡터 및 이를 이용한 단백질 생산방법. 등록번호 10-1207629-00-00, 출원번호 10-2009-0109334, 등록일 2012-11-27

2)   신재호, 이인구, 소재현, 김현호. 대장균 유래 xylF 프로모터 단편을 포함하는 자일로즈 유도성 발현벡터 및 이를 이용한 단백질 생산방법. 등록번호 10-1207706-00-00, 출원번호 10-2011-0108750, 등록일 2012-11-27

3)   신재호, 홍성준. 초고온성 아키아로부터 분리된 엘 아스파라기나아제를 이용한 엘 아스파라진의 제거법. 등록번호 10-1207287-00-00, 출원번호 10-2011-0082821, 등록일2012-11-27

4)   신재호, 장은경, 박건석. 포토랍두스 템페라타 미생물제제의 동결건조방법 및 그의 용도. 등록번호10-1254104-00-00, 출원번호 10-2011-0034743, 등록일 2013-04-08

5)   신재호, 장은경, 최명은. 신규의 곤충병원성세균인 포토랍두스 템페라타 J3. 등록번호10-1295021, 출원번호 10-2011-0012073, 등록일2013-08-05

6)   신재호, 장은경, 홍성준, 정경훈. 신규한 포토랍두스 템페라타 J5 및 이를 이용한 해충의 방제방법. 등록번호10-1295035, 출원번호 10-2011-0012074, 등록일2013-08-05.

7)   신재호, 장은경, 홍성준. 신규한 포토랍두스 템페라타 J6 및 이를 이용한 해충의 방제방법. 등록번호10-1295028, 출원번호 10-2011-0012075, 등록일2013-08-05

8)   신재호, 장은경, 신진호. 이윤하. 신규한 포토랍두스 템페라타 J7 및 이를 이용한 해충의 방제방법. 등록번호10-1295023, 출원번호 10-2011-0012076, 등록일2013-08-05

9)   신재호, 장은경, 신진호. 이윤하. 신규한 포토랍두스 템페라타 M1021 및 이를 이용한 해충의 방제방법. 등록번호10-1295026, 출원번호 10-2011-0012072, 등록일2013-08-05

10)  신재호, 장은경. 신규의 살충성 단백질, 이를 이용한 해충 방제용 조성물 및 해충 방제 방법. 등록번호 10-1314263, 출원번호 10-2011-0055507, 등록일 2013-09-26

11)  신재호, 홍성준. 써모코코스 코닥카렌시스 KOD1로부터 분리한 글루탐산 탈탄산효소 및 이를 이용한 고순도 가바의 제조방법. 등록번호 10-1320039, 출원번호: 10-2011-0065989, 등록일2013-10-14 

 12) 신재호, 장은경. 신규의 살충성 단백질, 이를 이용한 해충 방제용 조성물 및 해충 방제 방법. 등록번호 10-1380111, 등록일 2014-03-24

    13) 신재호, 신진호, 임종희, 박건석. 유용미생물을 이용한 수질정화용 흙공의 경도와 미생물상의 개선방법. 등록일 2014-07-22

  14) 신재호, 정병권, 홍성준, 박건석, 최정배. 신규한 벌크홀데리아 세파시아 JBK9 및 이를 이용한 잿빛 곰팡이의 방제방법. 등록일 2015-01-29

 

 

 

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