Jae-Ho Shin's Group HomePage


	PUBLICATIONS Last update at 2024.01.04. Peer-reviewed articles Total journal rejection counts since 2007 : 112 Total funding rejection counts since 2007 (total funding application counts) : 62 (97) Click here to see the full list of articles through the google scholar (2023) 220) Vineet Singh, *Yeong-Jun Park, GyuDae Lee, Tatsuya Unno & Jae-Ho Shin* (2023) Dietary regulations for microbiota dysbiosis among post-menopausal women with type 2 diabetes, Critical Reviews in Food Science and Nutrition, DOI: 10.1080/10408398.2022.2076651 219) Andargie, Y. E., Lee, G., Jeong, M., Tagele, S. B., & Shin, J. H. (2023) Deciphering Key Factors in Pathogen-Suppressive Microbiome Assembly in the Rhizosphere. Frontiers in Plant Science, 14, 1301698. 218) Min-Ji Kim, Dayun Kang, GyuDae Lee, Kyeongnam Kim, Jinnam Kim, Jae-Ho Shin, Seungjun Lee (co-corresponding) Interplays between cyanobacterial blooms and antibiotic resistance genes, Environment International, Volume 181, (2023) 108268 217) Son, Hyunwoo & Klingaite, Justina & Park, Sihyun & Shin, Jae-Ho. (2023). Exploring the role and characterization of Burkholderia cepacia CD2: a promising eco-friendly microbial fertilizer isolated from long-term chemical fertilizer-free soil. Journal of Applied Biological Chemistry. (2023) 66:53, 394−403 216) Kibaek Lee, Yeong-Jun Park, Tahir Iqbal, Hyeona Park, YeonGyun Jung, Jae-Ho Shin, Kwang-Ho Choo, Does quorum quenching matter to microbial community dynamics in long-term membrane bioreactor operation?, Water Research, Volume 244, 2023, 120473, 215) Jo Y, Sliti A, Shin J. Complete Genome Sequence of Priestia megaterium S1, Isolated from the Soybean Soil. Microbiol. Biotechnol. Lett 2023; 51:300-302. 214) Sliti A, Kim M, Lee G, Park Y, Shin J. Whole-Genome Sequence of Priestia aryabhattai Strain S2 Isolated from the Rhizosphere of Soybean (Glycine max). Microbiol. Biotechnol. Lett 2023; 51:296-299. 213) Park S, Lee G, Kim I, Jeong Y, Shin J. Complete Genome Sequence of the Enterobacter asburiae IK3 Isolated from a Soybean (Glycine max) Rhizosphere. Microbiol. Biotechnol. Lett 2023; 51:306-308. 212) Lim K, Jo H, Ibal JC, Kim M, Kim H, Lee D, Kang S, Shin J. Complete Genome Sequence of Priestia megaterium Hyangyak-01 Isolated from Rhizosphere Soil of Centella asiatica. Microbiol. Biotechnol. Lett 2023; 51:303-305. 211) Jo, YoungJae, GyuDae Lee, Sajjad Ahmad, HyunWoo Son, Min-Ji Kim, Amani Sliti, Seungjun Lee, Kyeongnam Kim, Sung-Eun Lee, and Jae-Ho Shin. (*2023) "The Alteration of the Gut Microbiome during Ramadan Offers a Novel Perspective on Ramadan Fasting: A Pilot Study" Microorganisms* 11, no. 8: 2106. 210) Kim J, Lee G, Han S, Kim MJ, Shin JH, Lee S. (2023) Microbial communities in aerosol generated from cyanobacterial bloom-affected freshwater bodies: an exploratory study in Nakdong River, South Korea. Front Microbiol. 209) Tino Bashizi, Min-Ji Kim, GyuDae Lee, Setu Bazie Tagele, Jae-Ho Shin (2023) Whole-Genome Sequence of Pseudomonas frederiksbergensis Strain A6, Isolated from the Rhizosphere of Pepper (Capsicum annuum L.) MRA ASM e00229-23 208) Jo, HyungWoo, Kyeongmo Lim, Jerald Conrad Ibal, Min-Chul Kim, Hye-Been Kim, Chaeyun Baek, Young Mok Heo, Haeun Lee, Seunghyun Kang, Dong-Geol Lee, and Jae-Ho Shin. (2023) "Growth Increase in the Herbaceous Plant Centella asiatica by the Plant Growth-Promoting Rhizobacteria Priestia megaterium HyangYak-01" Plants 12, no. 13: 2398. 207) Park, C. E., Cho, B. J., Kim, M. J., Kim, M. C., Park, M. K., Son, J. I., ... & Shin, J. H. (2023). Ecoinformatic Analysis of the Gut Ecological Diversity of Wild and Captive Long-Tailed Gorals Using Improved ITS2 Region Primers to Support Their Conservation. Microorganisms, 11(6), 1368 206) Kim, R. H., Tagele, S. B., Jeong, M., Jung, D. R., Lee, D., Park, T., ... & Shin, J. H. (2023). Spinach (Spinacia oleracea) as green manure modifies the soil nutrients and microbiota structure for enhanced pepper productivity. Scientific Reports, 13(1), 4140 205) Hwang YJ, Lee SY, Son JS, Youn JS, Lee W, Shin JH, Lee MH, Ghim SY. Microbacterium elymi sp. nov., Isolated from the Rhizospheric Soil of Elymus tsukushiensis, a Plant Native to the Dokdo Islands, Republic of Korea. J Microbiol Biotechnol. (2023) Feb 28;33(2):188-194. 204) Tagele, S.B., Kim, R.H., Jeong, M., Lim, K., Jung, D.R., Lee, D. Kim, W., and Shin, J.H. (2023) Soil Amendment with Cow Dung Modifies the Soil Nutrition and Microbiota to Reduce the Ginseng Replanting Problem. Frontiers in Plant Science, 14, p.130. 203) Jeong, M., Tagele, S.B., Kim, M.J., Ko, S.H., Kim, K.S., Koh, J.G., Jung, D.R., Jo, Y., Jung, Y., Park, Y.J., Kim, M.S. and Shin, J.H. (2023) The Death of Korean Fir (Abies koreana) Affects Soil Symbiotic Fungal Microbiome: Preliminary Findings. Frontiers in Forests and Global Change, 5, p.289. 202) Singh, V., Lee, G., Son, H., Koh, H., Kim, E.S., Unno, T. and Shin, J.H. (2023) Butyrate producers,“The Sentinel of Gut”: their intestinal significance with and beyond butyrate, and prospective use as microbial therapeutics. Frontiers in Microbiology, 13, p.5426 201) Park, Y. J., Kang, G. U., Jeong, M., Singh, V., Kim, J., Lee, K., ... & Shin, J. H. (2023) Bacterial Profiles of Brain in Downer Cattle with Unknown Etiology. Microorganisms, 11(1), 98. (2022) 200) Singh, V., Lee, G., Son, H., Amani, S., Baunthiyal, M. and Shin, J.H. (2022) Anti-diabetic prospects of dietary bio-actives of millets and the significance of the gut microbiota: A case of finger millet. Frontiers in Nutrition, 9, p.3154. 199) Tagele, S. B., Kim, R. H., Jeong, M., Jung, D. R., Lee, D., & Shin, J. H. (2022). An optimized biofumigant improves pepper yield without exerting detrimental effects on soil microbial diversity. Chemical and Biological Technologies in Agriculture, 9(1), 99. 198) Jung, D. R., Yoo, H. Y., Kim, M., Singh, V., Park, S. H., Jeong, M., Park, B. J. & Shin, J. H. (2022) Comparative Analysis of Scalp and Gut Microbiome in Androgenetic Alopecia: A Korean Cross-sectional Study. Frontiers in Microbiology, 13:1076242 197) Jo, YoungJae, Da-Ryung Jung, Tae-Hyung Park, Dokyung Lee, Min-Kyu Park, Kyeongmo Lim, and Jae-Ho Shin. (2022) "Changes in Microbial Community Structure in Response to Gummosis in Peach Tree Bark" Plants 11, no. 21: 2834. 196) Kim, M. J., Park, T., Jeong, M., Lee, G., Jung, D. R., & Shin, J. H. (2022). Complete Genome Sequence of Bacillus amyloliquefaciens KNU-28 Isolated from Peach Leaves (Prunus Persica [L.] Batsch). Microbiology Resource Announcements, 11(10), e00734-22. 195) Kim, M. J., Park, T., Jung, D. R., Lee, G., & Shin, J. H. (2022). 옥스포드 나노포어 시퀀싱 데이터로 조립한 Bacillus inaquosorum 1HC-NA 의 전장 유전체. Korean Journal of Microbiology, 58(3), 194-196. 194) Ibal, J. C., Park, Y. J., Park, M. K., Lee, J., Kim, M. C., & Shin, J. H. (2022). Review of the Current State of Freely Accessible Web Tools for the Analysis of 16S rRNA Sequencing of the Gut Microbiome. International Journal of Molecular Sciences, 23(18), 10865. 193) Singh, V., Son, H., Lee, G., Lee, S., Unno, T., & Shin, J. H. Role, Relevance, and Possibilities of In vitro fermentation models in human dietary, and gut‐microbial studies. Biotechnology and Bioengineering. 119(11), 3044-3061. 192) Kang, G. U., Park, S., Jung, Y., Jee, J. J., Kim, M. S., Lee, S.,Lee, D., & Jae-Ho Shin, Koh, H. Exploration of Potential Gut Microbiota-Derived Biomarkers to Predict the Success of Fecal Microbiota Transplantation in Ulcerative Colitis: A Prospective Cohort in Korea. Gut and Liver. 16(5), 775-785 191) Fentie, E. G., Jeong, M., Emire, S. A., Demsash, H. D., Kim, M. C., Lim, K., & Shin, J. H. (2022). Development of mixed starter culture for the fermentation of Ethiopian honey wine, Tej. Scientific Reports, 12(1), 1-15 190) Vineet Singh, Yeong-Jun Park, GyuDae Lee, Tatsuya Unno* & Jae-Ho Shin* (2022): Dietary regulations for microbiota dysbiosis among post-menopausal women with type 2 diabetes, Critical Reviews in Food Science and Nutrition 188) Zhang, X., Park, H., Park, Y. J., Lee, K., Yu, H., Shin, J. H., & Choo, K. H. (2022). Photolytic quorum quenching effects on the microbial communities and functional gene expressions in membrane bioreactors. Science of The Total Environment, 152017 187) Fentie, E. G., Jeong, M., Emire, S. A., Demsash, H. D., Kim, M. A., & Shin, J. H. (2022). Fermentation dynamics of spontaneously fermented Ethiopian honey wine, Tej. LWT, 112927. 186) Fentie, E. G., Jeong, M., Emire, S. A., Demsash, H. D., Kim, M. A. & Shin, J. H. (2022). Physicochemical properties, antioxidant activities and microbial communities of Ethiopian honey wine, Tej. Food Research International, 110765. 185) Azimirad, M., Jo, Y., Kim, M. S., Jeong, M., Shahrokh, S., Aghdaei, H. A., ... & Shin, J. H. (2022). Alterations and Prediction of Functional Profiles of Gut Microbiota After Fecal Microbiota Transplantation for Iranian Recurrent Clostridioides difficile Infection with Underlying Inflammatory Bowel Disease: A Pilot Study. Journal of Inflammation Research, 15, 105-116. (2021) 184) Sung, J. Y., Lee, Y. J., Cho, Y. J., Shin, M. N., Lee, S. J., Lee, H. S., ... Shin, J. H. & Lee, D. W. (2021). A Large‐Scale Metagenomic Study for Enzyme Profiles Using the Focused Identification of the NGS‐Based Definitive Enzyme Research (FINDER) Strategy. Biotechnology and Bioengineering. 2021-11, 183) Ibal, J. C., Park, M. K., Park, G. S., Jung, B. K., Park, T. H., Kim, M. S., Kang, K. U, Park, Y. J. & Shin, J. H. (2021). Use of Acyl-Homoserine Lactones Leads to Improved Growth of Ginseng Seedlings and Shifts in Soil Microbiome Structure. Agronomy, 11(11), 2177 182) Lee, S. Y., Kim, J. H., Kim, Y. J., Kim, Y. S., Roh, S. G., Lee, K. H., Kim, H. J., Shin, Jae-Ho & Oem, J. K. (2021). Astrovirus Infection in Cattle with Nonsuppurative Meningoencephalitis in South Korea. Viruses, 13(10), 1941. 2021-09-28 181) Min-Sueng Kim, Sang-Ho Kim, Minsoo Jeong, Min-Kyu Park, YoungJae Jo, GI-Ung Kang, Da-Ryung Jung, Chang-Il Lee and Jae-Ho Shin. (2021) Fermented Coffee Grounds Diminish Livestock Odors: A Microbiome Study. Agronomy, 11(10), 1914. 2021-09-24 180) Setu Bazie Tagele, Ryeong-Hui Kim, Jae-Ho Shin (2021) Interactions between Brassica Biofumigants and Soil Microbiota: Causes and Impacts. Journal of Agricultural and Food Chemistry. September 22, 2021, 10.1021/acs.jafc.1c03776 179) Park, Chang E., Bum-Joon Cho, Min-Ji Kim, Hee C. Park, and Jae-Ho Shin. (2021) "Geographical Relationships between Long-Tailed Goral (Naemorhedus caudatus) Populations Based on Gut Microbiome Analysis" Microorganisms 9, no. 9: 2002. 178) Lee, G., Kim, M. J., & Shin, J. H. (2021). Data on Complete Genome Sequence and Annotation of Paenibacillus sonchi LMG 24727T. Data in Brief, 107271. 8 August 2021, https://doi.org/10.1016/j.dib.2021.107271 177) Lee, S. Y., Son, J. S., Hwang, Y. J., Shin, J. H., & Ghim, S. Y. (2021). Metabacillus elymi sp. nov., isolated from the Rhizosphere of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea. Antonie van Leeuwenhoek, 114(10), 1709-1719. 176) Azizoglu, U., Yilmaz, N., Simsek, O., Ibal, J. C., Tagele, S. B., & Shin, J. H. (2021). The fate of plant growth-promoting rhizobacteria in soilless agriculture: future perspectives. 3 Biotech, 11(8), 1-13. 175) Gi-Ung Kang, Jerald Conrad Ibal, Seungjun Lee, Myeong Hwan Jang, Yeong-Jun Park, Min-Chul Kim, Tae-Hyung Park, Min-Sueng Kim, Ryeong-Hui Kim, and Jae-Ho Shin. Alteration of the Soil Microbiota in Ginseng Rusty Roots: Application of Machine Learning Algorithm to Explore Potential Biomarkers for Diagnostic and Predictive Analytics, J. Agric. Food Chem. 2021 Jul 28;69(29):8298-8306. 174) Min-Ji Kim, Setu Bazie Tagele, HyungWoo Jo, Min-Chul Kim, YeonGyun Jung, Yeong-Jun Park, Jai-Hyun So, Hae Jin Kim, Ho Jin Kim, Dong-Geol Lee, Seunghyun Kang, and Jae-Ho Shin. Effect of a Bioconverted Product of Lotus corniculatus Seed on the Axillary Microbiome and Body Odor. Scientific reports. 11, Article number: 10138 (2021) 173) Tae-Kyung Hwang, Yeong-Jun Park, Min-Ji Kim, Min-Kyu Park , Min-Chul Kim , Minsoo Jung, HyunWoo Son, Da-Ryung Jung, Tae-Il Lee, Soon-Ki Park, and Jae-Ho Shin. Isolation of Bacillus aryabhattai GW320 from the Cucumber Rhizospheric Soil and Evaluation of Plant Growth Promoting Activity. 한국토양비료학회지 ,제54권 제1호 126 - 139 172) Tae-Kyung Hwang, Yeong-Jun Park, Min-Ji Kim, Gyu-Dae Lee, Ryeong-Hui Kim, Tae-Il Lee, Soon-Ki Park, and Jae-Ho Shin*. Whole-genome sequence of Bacillus aryabhattai* strain GW320, a potential plant growth-promoting rhizobacterium from Cucumis sativus L. rhizospheric soil. Korean J. Microbiol. 2021;57(1):62-65 171) Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong* and *Jae-Ho Shin. Potential Association between Vaginal Microbiota and Cervical Carcinogenesis in Korean Women: A Cohort Study. Microorganisms (2021)Vol 9(2) 294 (2020) 170) Min-Ji Kim, Yeong-Jun Park, Min-Kyu Park, Chang Eon Park, YoungJae Jo, Setu Bazie Tagele, and Jae-Ho Shin. Complete genome sequence of Labrys sp. KNU-23 isolated from ginseng soil in the Republic of Korea. Korean Journal of Microbiology (2020) Vol. 56, No. 4, pp. 410-412. 169) Min-Kyu Park, Yeong-Jun Park, MinJi Kim, Min-Chul Kim, Jerald Conrad Ibal, Gi-Ung Kang, Gyu-Dae Lee, Setu Bazie Tagele, Hyuk-Joon Kwon, Myung-Suk Kang, Min-Ha Kim, Soo-Young Kim, and Jae-Ho Shin. Complete genome sequence of a plant growth-promoting bacterium Pseudarthrobacter sp. NIBRBAC000502772, isolated from shooting range soil in the Republic of Korea. Korean Journal of Microbiology. 제56권 제4호 pp. 390-393 168) Hwang, Ye-Ji, Jin-Soo Son, Soo-Yeong Lee, Min-Ji Kim, Jong Myong Park, Jae-Ho Shin, and Sa-Youl Ghim. "Adhaeribacter radiodurans sp. nov., isolated from the rhizospheric soil of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea." International Journal of Systematic and Evolutionary Microbiology (2020): ijsem004612. 167) Gi-Ung Kang, Da-Ryung Jung*, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae-Ho Shin. 2020. Dynamics of Fecal Microbiota with and without Invasive Cervical Cancer and its Application in Diagnosis. Cancers* 2020, 166) Fentie, E.G.; Emire, S.A.; Demsash, H.D.; Dadi, D.W.; Shin, J.-H. Cereal- and Fruit-Based Ethiopian Traditional Fermented Alcoholic Beverages. Foods 2020, 9, 1781. 165) Lee, Y.H., Kang, G.U., Jeon, S.Y., Tagele, S.B., Pham, H.Q., Kim, M.S., Ahmad, S., Jung, D.R., Park, Y.J., Han, H.S. Shin, J.H. and Jung, G.O., 2020. Vaginal Microbiome-Based Bacterial Signatures for Predicting the Severity of Cervical Intraepithelial Neoplasia. Diagnostics, 10(12), p.1013. 164) Harvey, B.P., Kerfahi, D., Jung, Y., Shin, J.H., Adams, J.M. and Hall-Spencer, J.M., 2020. Ocean acidification alters bacterial communities on marine plastic debris. Marine Pollution Bulletin, 161, p.111749 163) Jung, B.K., Ibal, J.C., Pham, H.Q., Kim, M.C., Park, G.S., Hong, S.J., Jo, H.W., Park, C.E., Choi, S.D., Jung, Y. and Tagele, S.B., Shin, J.H. 2020. Quorum Sensing System Affects the Plant Growth Promotion Traits of Serratia fonticola GS2. Frontiers in Microbiology, 11, p.2746. 162) Kammara, R., Akter, N., Hashim, R., Pham, H.Q., Choi, S.D. and Shin, J.H., 2020. Lactobacillus acidophilus antimicrobial peptide is antagonistic to Aeromonas hydrophila. Frontiers in Microbiology, 11, p.2358. 2020년 10월 161) Jin-Soo Son; Soo-Yeong Lee; Ye-Ji Hwang; Jae-Ho Shin; Sa-Youl Ghim. Microlunatus elymi sp. nov. a novel actinobacterium isolated from the rhizospheric soil of the wild plant Elymus tsukushiensis, IJSEM 2020년 08월 12일 160) Jung, Y.; Tagele, S.B.; Son, H.; Ibal, J.C.; Kerfahi, D.; Yun, H.; Lee, B.; Park, C.Y.; Kim, E.S.; Kim, S.-J.; Shin, J.-H. Modulation of Gut Microbiota in Korean Navy Trainees following a Healthy Lifestyle Change. Microorganisms 2020, 8, 1265. 159) Panida Sittipo, Huy Quang Pham, ChangEon Park, KiUng Kang, Ayeung Jang, Ho Seong Seo and Jae-Ho Shin, Yun Kyung Lee. 2020. Irradiation-induced intestinal damage is recovered by the indigenous gut bacteria Lactobacillus acidophilus. Frontiers in Cellular and Infection Microbiology. August 18 2020. 158) Dhanashree Lokesh, Shilja Choyam, Kammara Rajagopal and Jae Ho Shin. Biochemical Identification and Qualitative determination of Bifidobacteria directly on Petri plate SVOA Microbiology 157) Kim, W., Jeong, C., Seo, B., Nazki, S., Jung, B.K., Khatun, A., Yang, M., Kim, S., Noh, S., Shin, J. and Kim, B., 2020. Characterization of Clostridium novyi isolated from a sow in a sudden death case in Korea. BMC Veterinary Research. 30 Mar 2020 156) HyungWoo Jo, Setu Bazie Tagele, Huy Quang Pham, Min-Chul Kim, SeungDae Choi, Min-Ji Kim, Yeong-Jun Park, Jerald Conrad Ibal, Gun-Seok Park, Jae-Ho Shin. Response of soil bacterial community and pepper plant growth to application of Bacillus thuringiensis KNU-07. Agronomy, 15 April 2020 155) Young Jae Jo, Setu Bazie Tagele, Huy Quang Pham, YeonGyun Jung, Jerald Conrad Ibal, SeungDae Choi, Gi-Ung Kang, Sowon Park, Yunkoo Kang, Seung Kim, Hong Koh and Jae-Ho Shin. In Situ Profiling of the Three Dominant Phyla Within the Human Gut Using TaqMan PCR for Pre-Hospital Diagnosis of Gut Dysbiosis. International Journal of Molecular Sciences, 11 March 2020. 154) Min-Ju Kim, Mi-Kyung Lee, Huy Quang Pham, Myeong Ju Gu, Bohan Zhu, Sung-Hun Son, Dongyup Hahn, Jae-Ho Shin, Jae-Hyuk Yu, Hee-Soo Park, Kap-Hoon Han, The velvet regulator VosA governs survival and secondary metabolism of sexual spores in Aspergillus nidulans, Genes, 2073-4425 153) Eun-Kyung Jang, Byung Kwon Jung, Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, Yeong-Jun Park, Won-Chan Kim, Jae-Ho Shin, Khalid M S Al-Ghamdi, Bassam Oudh Al-Johny, Yasir Anwar, Muhammad Faisal Siddiqui, Ihsan Ullah. "Cloning and expression of the insecticidal toxin gene “tccB” from Photorhabdus temperata M1021 in Escherichia coli expression system." Journal of Asia-Pacific Entomology (2020). 152) Ye-Ji Hwang; Jin-Soo Son; Soo-Yeong Lee; Yuxi He; YoungJae Jo; Shin Jae-Ho; Sa-Youl Ghim. Nocardioides sambongensis sp. nov., isolated from the Dokdo Islands soil. IJSEM vol. 70 151) Chang Eon Park, Yeong-Jun Park , Min-Chul Kim, Min-Kyu Park, YeonGyun Jung, Seung-Dae Choi, YoungJae Jo, Gi-Ung Kang, Min-Ji Kim, Qing X. Li, Brandon A. Yoza, Kgu-Hwan Kim, Hee Cheon Park & Jae-Ho Shin "The first complete mitochondrial genome sequence of the Korean endemic catfish Silurus microdorsalis (Actinopteri, Siluriformes, Siluridae)." Mitochondrial DNA Part B 5, no. 1 (2020): 131-132. (2019) 150) Park, Min-Kyu, Yeong-Jun Park, Min-Chul Kim, Gi-Ung Kang, MinJi Kim, YoungJae Jo, Hyuk-Joon Kwon, Myung-Suk Kang , Min-Ha Kim , Soo-Young Kim, and Jae-Ho Shin "한국의 사격장 토양에서 분리된 Pseudarthrobacter sp. NIBRBAC000502771 의 유전체 서열." Korean Journal of Microbiology 55, no. 4 (2019): 419-421. 149) Dhanashree Lokesh, Kammara Rajagopal, Jae Ho Shin. Multidrug Resistant Probiotics as an Alternative to Antibiotic Probiotic therapy. Journal of Infectiology. 2019; 2(5):1-4. 148) Alexis Nzila, Shaikh Abdur Razzak, Saravanan Sankara, Mazen K. Nazal, Marwan Al-Momani, Gi-Ung Kang, Jerald Conrad Ibal, Jae-Ho Shin. Characterisation and microbial community analysis of lipid utilising microorganisms for biogas formation. PLOS one, Nov 8, 2019 / https://doi.org/10.1371/journal.pone.0224989 147) Abdur Rahim Khan, L. G. Reichmann, J. C. Ibal, J. H. Shin, Y. Liu, H. Collins, B. LePage, and Norman Terry. Variation in pickleweed root-associated microbial communities at different locations of a saline solid waste management unit contaminated with petroleum hydrocarbons. 2019 Oct 3, PLOS ONE https://doi.org/10.1371/journal.pone.0222901 146) Shilja Choyam, Alok Kumar Srivastava, Jae-Ho Shin and Rajagopal Kammara. Ocins for Food Safety. Front. Microbiol., 02 August 2019 \| https://doi.org/10.3389/fmicb.2019.01736 145) Weerasekara, Nuwan Asanka, Sung-Geun Woo, Craig Criddle, Tahir Iqbal, Kibaek Lee, Yeong-Jun Park, Jae-Ho Shin, and Kwang-Ho Choo. "Clues to membrane fouling hidden within the microbial communities of membrane bioreactors." Environmental Science: Water Research & Technology (2019). 5, 1389-1399. 144) YeonGyun Jung, Byung Kwon Jung, Chang Eon Park, Jerald Conrad Ibal, Sang-Jun Kim, and Jae-Ho Shin Complete genome sequence of Microbacterium aurum strain KACC 15219T, a carbohydrate-degrading bacterium. Korean J. of Microbiol. 2019 Jun; 55(2) 164-166 143) Kim DR, Jeon CW, Shin JH, Weller DM, Thomashow L, Kwak YS. Function and distribution of a lantipeptide in strawberry Fusarium wilt disease-suppressive soils. Molecular Plant-Microbe Interactions. 2019 Mar;32(3):306-312 142) Park, Chang Eon, Min-Chul Kim, Jerald Conrad Pernites Ibal, Huy Quang Pham, Hee Cheon Park, and Jae-Ho Shin. "The complete mitochondrial genome sequence of Dendrocopos major (Aves, Piciformes, Picidae)." Mitochondrial DNA Part B 4, no. 1 (2019): 777-778. 141) Park, Chang Eon, Min-Chul Kim, Jerald Conrad Pernites Ibal, Huy Quang Pham, Hee Cheon Park, and Jae-Ho Shin. "The complete mitochondrial genome sequence of Otus bakkamoena (Aves, Strigiformes, Strigidae)." Mitochondrial DNA Part B 4, no. 1 (2019): 775-776. 140) Park, Chang Eon, Min-Chul Kim, Jerald Conrad Pernites Ibal, Huy Quang Pham, Hee Cheon Park, and Jae-Ho Shin. "The complete mitochondrial genome sequence of Otus scops (Aves, Strigiformes, Strigidae)." Mitochondrial DNA Part B 4, no. 1 (2019): 764-765. 139) Park, Chang Eon, Min-Chul Kim, Huy Pham Quang, Hee Cheon Park, and Jae-Ho Shin. "The complete mitochondrial genome sequence of Zoothera aurea (Aves, Passeriformes, Turdidae)." Mitochondrial DNA Part B 4, no. 1 (2019). 797-798 138) Ibal, Jerald Conrad, Huy Quang Pham, Chang Eon Park, and Jae-Ho Shin. "Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification." PLOS ONE 14, no. 2 (2019): e0212090 137) Park, Yeong-Jun, Chang Eon Park, Byung Kwon Jung, Min-Kyu Park, Jerald Conrad Ibal, Sang-Jun Kim, Seok Hyun Lee, Hyun Sook Ko, and Jae-Ho Shin. "The first complete mitochondrial genome sequence of the mud crab Macrophthalmus japonicus (arthropoda, decapoda, macrophthalmidae)." Mitochondrial DNA Part B 4, no. 1 (2019): 259-260. 136) Ibal, Jerald Conrad, Byung Kwon Jung, Chang Eon Park, and Jae-Ho Shin. "Plant growth-promoting rhizobacteria used in South Korea." (2018) Applied Biological Chemistry: 61(6): 709-716. 135) Nzila, Alexis, Byung Kwon Jung, Min-Chul Kim, Jerald Conrad Ibal, Fitri Budiyanto, Musa M. Musa, Assad Thukair, Sang-Jun Kim, and Jae-Ho Shin. "Complete genome sequence of the polycyclic aromatic hydrocarbons biodegrading bacterium Idiomarina piscisalsi strain 10PY1A isolated from oil-contaminated soil." Korean J. Microbiology 54, no. 3 (2018): 289-292 (2018) 134) Yeong-Jun Park, Byung Kwon Jung, Sung-Jun Hong, Gun-Seok Park, Jerald Conrad Ibal, Huy Quang Pham, and Jae-Ho Shin. Expression and characterization of calcium- and zinc-tolerant xylose isomerase from Anoxybacillus kamchatkensis G10. (2018) J. Microbiol. Biotechnol. 28(4):606-612 133) Byung Kwon Jung, Sung-Jun Hong, Gun-Seok Park, Min-Chul Kim, Jae-Ho Shin. Isolation of Burkholderia cepacia JBK9 with plant growth promoting activity while producing pyrrolnitrin antagonistic to plant fungal diseases. (2018) Applied Biological Chemistry 61(2):173-180. 132) Lee, Seung-Chul, Sunhee Lee, Gun-Woo Yoo, Hwan-Won Choi, Yun-Hee Noh, Chang Eon Park, Jae-Ho Shin, In-Joong Yoon, Shien-Young Kang, and Changhee Lee. "Phenotypic and genotypic analyses of an attenuated porcine reproductive and respiratory syndrome virus strain after serial passages in cultured porcine alveolar macrophages." Journal of veterinary science 19, no. 3 (2018): 358-367. 131) Jung BK, Hong SJ, Jo HW, Jung Y, Park YJ, Park CE, Kim MC, Ibal JC, Roh DH, Shin JH. Genome sequencing to develop Paenibacillus donghaensis strain JH8 T (KCTC 13049 T= LMG 23780 T) as a microbial fertilizer and correlation to its plant growth-promoting phenotype. Marine Genomics. 2018 Feb. 37: 39-42 130) Yeong-Jun Park, Chang Eon Park, Seok Hyun Lee, Hyun Sook Ko, Ihsan Ullah, Ui Wook Hwang and Jae-Ho Shin (2018). The complete mitochondrial genome sequence of the intertidal crab Parasesarma tripectinis (Arthropoda, Decapoda, Sesarmidae). Mitochondrial DNA Part B. 3(1), 193-194. 129) Koh, Hong, Gun-Seok Park, Sun-Mi Shin, Chang Eon Park, Seung Kim, Seok Joo Han, *Huy Quang Pham, Jae-Ho Shin,** and Dong-Woo Lee. "Mitochondrial Mutations in Cholestatic Liver Disease with Biliary Atresia." Scientific reports 8, no. 1 (2018): 905. co-corresponding authors (2017) 128) Park, Yeong-Jun & Park, Changeon & Jung, Byung Kwon & Conrad Ibal, Jerald & Jung, YeonGyun & Hong, Sung-Jun & Park, Gun-Seok & Lee, Seok Hyun & Ko, Hyun Sook & Shin, Jae-Ho. (2017). The first complete mitochondrial genome sequence of the leucosiid crab Pyrhila pisum (Arthropoda, Decapoda, Leucosiidae). Mitochondrial DNA Part B. 2. 885-886. 127) Park, Changeon & Kim, Min-Chul & Kim, Kgu-Hwan & Cheon Park, Hee & Shin, Jae-Ho. (2017). The complete mitochondrial genome sequence of Liobagrus mediadiposalis (Teleostei, Siluriformes, Amblycipitidae). Mitochondrial DNA Part B. 2. 879-880. 126) Park YJ, Park CE, Hong SJ, Jung BK, Ibal JC, Park GS, Shin JH. The complete mitochondrial genome sequence of the greater wax moth Galleria mellonella (Insecta, Lepidoptera, Pyralidae): sequence and phylogenetic analysis comparison based on whole mitogenome. Mitochondrial DNA Part B. 2017 Dec 20;2(2):714-5. 125) Byung Kwon Jung, Abdur Rahim Khan, Sung-Jun Hong, Gun-Seok Park, Yeong-Jun Park, Ho-Jin Kim, Hwang-Ju Jeon, Muhammad Aaqil Khan, Muhammad Waqas, In-Jung Lee, Sung-Eun Lee, and Jae-Ho Shin Quorum Sensing Activity of Plant Growth-Promoting Rhizobacterium Serratia glossinae GS2 Isolated from the Sesame (Sesamum indicum L.) Rhizosphere. 2017. Ann. Microbiol. 67(9):623-632 124) Park, Gun-Seok, Sung-Jun Hong, Byung Kwon Jung, Seulki Park, Hyewon Jin, Sang-Jae Lee, Jae-Ho Shin, and Han-Seung Lee. "Whole genome sequence of lactic acid bacterium Pediococcus acidilactici strain S1." Brazilian Journal of Microbiology (2017). Jul-Sep;48(3):395-396 123) Lee, Yong-Jik, Min-Kyu Park, Gun-Seok Park, Sang-Jae Lee, Sang Jun Lee, Bradley Seokhan Kim, Jae-Ho Shin, and Dong-Woo Lee. "Complete genome sequence of the thermophilic bacterium Geobacillus subterraneus KCTC 3922 T as a potential denitrifier." Journal of Biotechnology 251 (2017): 141-144. 122) Sung-Jun Hong, Gun-Seok Park, Abdur Rahim Khan, Byung Kwon Jung and Jae-Ho Shin. Draft genome sequence of Pseudomonas taiwanensis strain SJ9, a caprolactam degrader. Brazilian Journal of Microbiology. (2017) Apr 07, 48: 187-188 121) Abdur Rahim Khan, Muhammad Waqas, Ihsan Ullah, Abdul Latif Khan, Muhammad Aaqil Khan, In-Jung Lee, Jae-Ho Shin. Culturable endophytic fungal diversity of cadmium hyperaccumulator Solanum nigrum L. and their role in enhancing phytoremediation. Environ & Exp Botany, 2017 Mar 17; 135:126-35 120) Abdur Rahim Khan, Chang Eon Park, Gun-Seok Park, Young-Jin Seo, Jai-Hyun So, and Jae-Ho Shin. The whole chloroplast genome sequence of black nightshade plant (Solanum nigrum). Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Mar, 28(2):169-170 119) Abdur Rahim Khan, Gun-Seok Park, Sajjad Asaf, Sung-Jun Hong, Byung Kwon Jung, Jae-Ho Shin. Complete genome analysis of Serratia marcescens RSC-14: A plant growth-promoting bacterium that alleviates cadmium stress in host plants. PLoS one, (2017) Feb 10, 12(2) e0171534 118) Abdur Rahim Khan, Ihsan Ullah, Muhammad Waqas, Gun-Seok Park, Abdul Latif Khan, Sung-Jun Hong, Rehman Ali, Byung Kwon Jung, Chang Eon Park, Shafiq Ur-Rehman, In-Jung Lee, Jae-Ho Shin. Host plant growth promotion and cadmium detoxification in Solanum nigrum, mediated by endophytic fungi. Ecotoxicology and Environmental Safety 136 (2017): 180-188. *117) Chang Eon Park, Gun-Seok Park, Min-Chul Kim,* Kgu-Hwan Kim, Hee Cheon Park, and Jae-Ho Shin. The complete mitochondrial genome of Kichulchoia multifasciata (Teleostei, Cypriniformes, Cobitidae), Mitochondrial DNA A DNA Mapp Seq Anal. 28(1) 119-120 * These two authors contributed equally to this work 116) Abdul Latif Khan, Ahmed Al-Harrasi , Sajjad Asaf, Chang Eon Park, Gun-Seok Park, Abdur Rahim Khan, In-Jung Lee, Ahmed Al-Rawahi, Jae-Ho Shin. The First Chloroplast Genome Sequence of Boswellia sacra, a Resin-Producing Plant in Oman. PLoS One. 2017 Jan 13;12(1):e0169794 115) Jung, Byung Kwon, Abdur Rahim Khan, Sung-Jun Hong, Gun-Seok Park, Yeong-Jun Park, Chang Eon Park, Hwang-Ju Jeon, Sung-Eun Lee, and Jae-Ho Shin. "Genomic and phenotypic analyses of Serratia fonticola strain GS2: a rhizobacterium isolated from sesame rhizosphere that promotes plant growth and produces N-acyl homoserine lactone." Journal of Biotechnology 241 (2017): 158-162. 114) Sung-Jun Hong, Chang Eon Park, Gun-Seok Park, Min-Chul Kim, Byung Kwon Jung and Jae-Ho Shin. Draft genome sequence of sulfur-reducing archaeon Thermococcus thioreducens DSM 14981^T. Brazilian Journal of Microbiology. (2017) 48: 3-4 113) Gun-Seok Park, Sung-Jun Hong, Seulki Park, Hyewon Jin, Sang-Jae Lee, Jae-Ho Shin and Han-Seung Lee. Draft genome sequence of alcohol-tolerant bacteria Pediococcus acidilactici strain K3. Brazilian Journal of Microbiology. (2017) 48: 1-2 (2016) 112) Chang Eon Park, Gun-Seok Park, Min-Chul Kim, Kgu-Hwan Kim, Hee heon Park and Jae-Ho Shin. The complete mitochondrial genome sequence of Squalidus japonicus coreanus (Teleostei, Cypriniformes, Cyprinidae). Mitochondrial DNA. 27(5):3723-3724 111) Chang Eon Park, Gun-Seok Park, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, In-Jung Lee and Jae-Ho Shin. Complete mitochondrial genome of the Korean endemic species Microphysogobio yaluensis (Teleostei, Cypriniformes, Cyprinidae). Mitochondrial DNA Part A, 27(5): 3557-3559. 110) Chang Eon Park, Gun-Seok Park, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yeong-Jun Park, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, In-Jung Lee and Jae-Ho Shin. Complete mitochondrial genome of the endemic species Korean aucha perch Coreoperca herzi (Teleostei, Centrarchiformes, Sinipercidae). Mitochondrial DNA Part A, 27(5): 3493–3495. 2016. 09. * These two authors contributed equally to this work 109) Chang Eon Park, Gun-Seok Park, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yung-Jun Park, Jong-Guk Kim, Hee Cheon Park and Jae-Ho Shin. Complete mitochondrial genome of Cygnus olor (Aves, Anseriformes, Anatidae). Mitochondrial DNA Part A, 27(5):3442-3443. 2016. 09. * These two authors contributed equally to this work. 106) Chang Eon Park, Gun-Seok Park, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yung-Jun Park, Jong-Guk Kim, Hee Cheon Park and Jae-Ho Shin. Complete mitochondrial genome of Cygnus cygnus (Aves, Anseriformes, Anatidae). Mitochondrial DNA Part A, 27(4):2907-8. 2016.07. * These two authors contributed equally to this work. 105) Abdul Latif Khan, Ahmed Al-Harrasi, Ahmed Al-Rawahi, Zainab Al-Farsi, Aza Al-Mamari, Muhammad Waqas, Sajjad Asaf, Ali Elyassi, Fazal Mabood, Jae-Ho Shin, In-Jung Lee. Endophytic Fungi from Frankincense Tree Improves Host Growth and Produces Extracellular Enzymes and Indole Acetic Acid. PlosOne. June 30, 2016. 104) Seung-Chul Lee, Hwan-Won Choi, Eeuri Nam, Yun-Hee Noh, Sunhee Lee, Yoo Jin Lee, Gun-Seok Park, Jae-Ho Shin, In-Joong Yoon, Shien-Young Kang, Changhee Lee. Pathogenicity and genetic characteristics associated with cell adaptation of a virulent porcine reproductive and respiratory syndrome virus nsp2 DEL strain CA-2, Veterinary Microbiology (2016) 186, p. 174-188. 103) Sajjad Asaf, Abdul Latif khan; Abdur Rahim Khan; Muhammad Waqas; Sang-Mo Kang; Muhammad Aaqil Khan; Raheem Shahzad; Chang Woo Seo; Jae-Ho Shin; In-Jung Lee. (2016). Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species. PloS one, 11(4), e0152937 102) Mashooq Khan, Abdur Rahim Khan, Jae-Ho Shin and Soo-Young Park. A liquid-crystal-based DNA biosensor for pathogen detection, Scientific Reports (2016) 6, Mar. 03. 101) Gun-Seok Park, Sung-Jun Hong, Byung Kwon Jung, Changhee Lee, Choi Kyu Park, Jae-Ho Shin. The complete genome sequence of a lactic acid bacterium Leuconostoc mesenteroides ssp. dextranicum strain DSM 20484T, J Biotech. (2016) 219, p. 3 – 4. 99) Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, ByungKwon Jung, Jong-Guk Kim, Jae-Ho Shin. An Improved Soil Ball Making Method for the Water Quality Control, Envion. Sci. Pollut. Res (2016) 23:1100-1107 (2015) 98) Irina Khalmuratova,, Hyun Kim, Yoon-Jong Nam, Yoosun Oh, Min-Ji Jeong, Hye-Rim Choi, Young-Hyun You, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, Hyeokjun Yoon and Jong-Guk Kim. (2015). Diversity and Plant Growth Promoting Capacity of Endophytic Fungi Associated with Halophytic Plants from the West Coast of Korea.Mycobiology, 43(4), 373-383. 96) Gun-Seok Park, Sung-Jun Hong, Byung Kwon Jung, Abdur Rahim Khan, Yeong-Jun Park, Chang Eon Park, Ara Lee, Yong-Jik Lee, Dong-Woo Lee, Changhee Lee, Choi Kyu Park, Jae-Ho Shin. Complete genome sequence of a keratin-degrading bacterium Chryseobacterium gallinarum strain DSM 27622T isolated from chicken. Journal of Biotechnology. (2015) 211, p. 66-67 94) Sung-Jun Hong, Gun-Seok Park, Byung Kwon Jung, Abdur Rahim Khan, Yeong-Jun Park, Chang-Hyun Lee, Jae-Ho Shin. Isolation, identification, and characterization of a keratin-degrading bacterium Chryseobacterium sp. P1-3 JABC (2015) 58(3), 247-251 93) Yong-Jik Lee, Haeyoung Jeong, Gun-Seok Park, Sang-Jae Lee, Sang Jun Lee, Min-Kyu Park, Ji-Yeon Kim, Hwan Ku Kang, Jae-Ho Shin and Dong-Woo Lee. Genome sequence of a native-feather degrading extremely thermophilic Eubacterium, Fervidobacterium islandicum AW-1. Standards in Genomic Sciences. (2015) 10:71 92) Abdur Rahim Khan, Ihsan Ullah, Muhammad Waqas, Raheem Shahzad, Sung-Jun Hong, Gun-Seok Park, Byung Kwon Jung, In-Jung Lee, Jae-Ho Shin. Plant growth promoting potential of endophytic fungi isolated from Solanum nigrum leaves. World Journal of Microbiology and Biotechnology. 2015 Sep;31(9):1461-6 91) Khan, A. R., Ullah, I., Khan, A. L., Park, G. S., Waqas, M., Hong, S. J., Jung, B. K., Lee, I. J., Shin, J. H. (2015). Improvement in phytoremediation potential of Solanum nigrum under cadmium contamination through endophytic-assisted Serratia sp. RSC-14 inoculation. Environmental Science and Pollution Research. 2015 Sep;22(18):14032-42. 90) Byung Kwon Jung, Sang-Dal Kim, Abdur Rahim Khan, Jong-Hui Lim, Chang-Hwan An, Yo-Hwan Kim, Jin Ha Song, Sung-Jun Hong, Jae-Ho Shin. Rhizobacterial Communities and Red Pepper (Capsicum annum) Yield under Different Cropping Systems. International Journal of Agriculture and Biology (2015) 17:734‒740 89) Sung-Jun Hong, Gun-Seok Park, Abdur Rahim Khan, Byung Kown Jung, Yeong-Jun Park, Na-Kyung Yoo, Changhee Lee, Choi Kyu Park, and Jae-Ho Shin. Draft genome sequence of caprolactam degrading Pseudomonas putida strain SJ3. Genome Announcement. 2015 Jul-Aug; 3(4): e00810-15. 87) Sung-Jun Hong, Ihsan Ullah, Gun-Seok Park, Byung Kwon Jung, JungBae Choi, Abdur Rahim Khan, Min-Chul Kim and Jae-Ho Shin. Draft Genome Sequence and Annotation of the Insect Pathogenic Bacterium Xenorhabdus nematophila Strain C2-3, Isolated from Nematode Steinernema carpocapsae in the Republic of Korea, Genome announcement, Volume 3, 1 (2015) e01521-14 86) Ihsan Ullah, Abdul Latif Khan, Liaqat Ali, Abdur Rahim Khan, Muhammad Waqas, Javid Hussain, In-Jung Lee, and Jae-Ho Shin. Benzaldehyde as an Insecticidal, Antimicrobial, and Antioxidant Compound Produced by Photorhabdus temperata M1021, Journal of Microbiology, 2015, Feb. 53(2) 127-133 (2014) 83) Gun-Seok Park, Ji-Hun Chu, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Ihsan Ullah, and Jae-Ho Shin, Complete genome sequence of the caprolactam-degrading bacterium Pseudomonas mosselii SJ10 isolated from wastewater of a nylon 6 production plant. Journal of Biotechnology, (2014) 192: 263-264 82) Ullah, I., Khan, A. L., Ali, L., Khan, A. R., Waqas, M., Lee, I. J., & Shin, J. H. (2014). An Insecticidal Compound Produced by an Insect-Pathogenic Bacterium Suppresses Host Defenses through Phenoloxidase Inhibition. Molecules, 19(12), 20913-20928. 2014.12.12. 81) Gun-Seok Park, Sung-Jun Hong, Chang-Hyun Lee, Abdur Rahim Khan, Ihsan Ullah, Byung Kwon Jung, JungBae Choi, Chang-Gi Back, Hee-Young Jung, Jae-Ho Shin, Draft Genome Sequence of Chryseobacterium sp. P1-3, a Keratinolytic Bacterium Isolated from the Poultry Waste. Genome Announcement, (2014) 80) Susan Krueger, Jae-Ho Shin, Joseph E. Curtis, Kenneth A. Rubinson and Zvi Kelman. The solution structure of full-length dodecameric MCM by SANS and molecular modeling. Proteins: Structure, Function, and Bioinformatics (2014) 10:2364 78) Abdur Rahim Khan · Ihsan Ullah · Abdul Latif Khan · Sung-Jun Hong · Muhammad Waqas · Gun-Seok Park · JungBae Choi · Byung-Kwon Jung · Man Park · In-Jung Lee · Jae-Ho Shin. Phytostabilization and Physicochemical Responses of Korean Ecotype Solanum nigrum L. to Cadmium Contamination. Water, Air, & Soil Pollution (2014) 225:2147 77) Abdul Khan, Jae-Ho Shin, Hee-Young Jung, In-Jung Lee,. Regulations of capsaicin synthesis in Capsicum annuum L by Penicillium resedanum LK6 during drought conditions. Scientia Horticulturae (2014) 175: 167-173 76) Ihsan Ullah, Abdur Rahim Khan, Byung Kwon Jung, Abdul Latif Khan, In-Jung Lee and Jae-Ho Shin. Gibberellins synthesized by the entomopathogenic bacterium, Photorhabdus temperata M1021 as one of the factors of rice plant growth promotion. Journal of Plant Interactions (2014) Vol 9. issue 1 75) Ihsan Ullah, Eun-Kyung Jang, Min-Sung Kim, Jin-Ho Shin, Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, Byung-Kwon Jung, JungBae Choi, YeongJun Park, Jae-Ho Shin. Identification and characterization of the insecticidal toxin “makes caterpillars floppy” in Photorhabdus temperata M1021 using a cosmid library. Toxins(2014) 6(7) 2024-2040 74) Hyun Kim, Young-Hyun You, Hyeokjun Yoon, Yeonggyo Seo, Ye-Eun Kim, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, and Jong-Guk Kim. Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast. Mycobiology. 2014 Jun;42(2):100-108 73) Sung-Jun Hong, Yun-Ha Lee, Abdur Rahim Khan, Ihsan Ullah, Changhee Lee, Choi Kyu Park and Jae-Ho Shin. Cloning, expression, and characterization of thermophilic L-asparaginase from Thermococcus kodakarensis KOD1. Journal of Basic Microbiology (2014). 72) Sunhee Lee, Gun-Seok Park, Jae-Ho Shin, and Changhee Lee, Complete Genome Sequence of New Variant of Porcine Epidemic Diarrhea Virus from South Korea. 2014.05.29. Genome Announcement 71) Ramalingam Radhakrishnan, Jae-Ho Shin, Yeon-Sik Choo, Jong-Guk Kim and In-Jung Lee. Studies on toxic effects of nitrogenous compound, putrescine and spermine on cucumber plant growth. Journal of Environmental Biology (2014) p. 247-251 70) Yoon-Ha Kim, Abdul Latif Khan, Duk-Hwan Kim, Seung-Yeol Lee, Kyung-Min Kim, Muhammad Waqas, Hee-Young Jung, Jae-Ho Shin, Jong-Guk Kim and In-Jung Lee. Silicon mitigates heavy metal stress by regulating P-type heavy metal ATPases, Oryza sativa low silicon genes, and endogenous phytohormones. BMC plant biology (2014) 14(13) (2013) 68) Yu Na Lee, Choi-Kyu Park, Seong-Hee Kim, Du Sik Lee, Jae-Ho Shin and Changhee Lee. Characterization in vitro and in vivo of a novel porcine parainfluenza virus 5 isolate in Korea. Virus research (2013) 178(2) 423-429 67) Sang-Jae Lee, Yong-Jik Lee, Gun-Seok Park, Byoung-Chan Kim, Sang Jun Lee, Jae-Ho Shin, and Dong-Woo Lee. Draft Genome Sequence of a strictly anaerobic and extremely thermophilic bacterium Caldanaerobacter yonseiensis" Genome Announcement (2013) vol. 1 no. e00923-13 66) Abdul Latif Khan, Muhammad Waqas, Abdur Rahim Khan, Javid Hussain, Sang-Mo Kang, Syed Abdullah Gilani, Muhammad Hamayun, Jae-Ho Shin, Muhammad Kamran, Ahmed Al-Harrasi, Byung-Wook Yun, Muhammad Adnan, In-Jung Lee. Fungal endophyte Penicillium janthinellum LK5 improves growth of ABA-deficient tomato under salinity. World J Microbial Biotechnol (2013) 65) Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, Eun-Kyung Jang, Ihsan Ullah, Byung Kwon Jung, JungBae Choi, Na-Kyung Yoo, Keun-Joon Park and Jae-Ho Shin. Draft Genome Sequence of Entomopathogenic Bacterium Photorhabdus temperata Strain M1021, Isolated from Nematodes. Genome announcements (2013) 1(5) 62) Myeongeun Choe, Sung-Jun Hong, Jong-Hui Lim, Chang-Gi Back, Hee-Young Jung, In-Jung Lee, Jae-Ho Shin. Korean Paddy Soil Microbial Community Analysis Method Using Denaturing Gradient Gel Electrophoresis. J Appl Biol Chem (2013) 56(2), 95-100 61) Ihsan Ullah, Abdur Rahim Khan, Gun-Seok Park, Jong-Hui Lim, Muhammad Waqas, In-Jung Lee and Jae-Ho Shin. Analysis of phytohormones and phosphate solubilization in Photorhabdus spp. Food Sci.Biotechnol (2013) 22(S) 25-31 (2012) 59) Miae Kim, Young-Hyun You, Hyeokjun Yoon, Hyun Kim, Yeonggyo Seo, Irina Khalmuratova, Jae-Ho Shin, In-Jung Lee, Yeon-Sik Choo and Jong-Guk Kim. Genetic Diversity of Endophytic Fungal Strains Isolated from the Roots of Coastal Plants in Ulleung Island for Restoration of Coastal Ecosystem. Journal of Life Science 2012 Vol. 22. No. 10. 1384~1391 58) Jang, Eun-Kyung, Ihsan Ullah, Jong-Hui Lim, In-Jung Lee, Jong-Guk Kim, and Jae-Ho Shin. Physiological and Molecular Characterization of a Newly Identified Entomopathogenic Bacteria, Photorhabdus temperata M1021. J. Microbiol. Biotechnol. First Published Online (2012)22(12) 1605-1612 57) Young-Hyun You, Hyeokjun Yoon, Sang-Mo Kang, Ju-Ri Woo, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, Jong-Guk Kim, Cadophora malorum Cs-8-1 as a new fungal strain producing gibberellins isolated from Calystegia soldanella. Journal of Basic Microbiology. (2012) 52, 1–5 2012.09.07 56) Young-Hyun You, Hyeokjun Yoon, Sang-Mo Kang, Jae-Ho Shin, Yeon-Sik Choo, In-Jung Lee, Jin-Man Lee, and Jong-Guk Kim. Fungal Diversity and Plant Growth Promotion of Endophytic Fungi from Six Halophytes in Suncheon Bay J. Microbiol. Biotechnol. (2012) 22(11), 1550–1557 July 17. 54) Gun-Seok Park · Eun-Kyung Jang · Min-Sung Kim · Jae-Ho Shin. Insecticidal Activity and Stability by Freeze-drying of Entomopathogenic Bacteria, Photorhabdus temperata M1021. J Appl Biol Chem (2012) 55(2), 123-127 53) Sung-Jun Hong, Ihsan Ullah, Gun-Seok Park, Changhee Lee, and Jae-Ho Shin. Overexpression and Characterization of Recombinant Glutamate Decarboxylase from Thermococcus kodakaraensis KOD1. J. Korean Soc. Appl. Biol. Chem. 2012. 55, 213-218. (2011) 52) Myeongeun Choe, In-Jung Lee, Jae-Ho Shin. Assessment of Korean paddy soil microbial community structure by use of quantitative real-time PCR assays. Korean J Environ. Agric. 2011. Dec 30, 30(4): 367-376. 51) Young-Hyun You, Hyeokjun Yoon, Ju-Ri Woo, Yeounggyo Seo, Jae-Ho Shin, Yeon-Sik Choo, In-Jung Lee, Jong-Guk Kim. Plant Growth Promotion Activity of Endophytic Fngi Isolated from the Roots of Calystegia soldanella. Korean J. Microbiol. Biotechnol. 2011. Dec 28, 39(4): 324-329. 50. S. Krueger, J.-H. Shin, S. Raghunandan, J. E. Curtis, and Z. Kelman. Atomistic Ensemble Modeling and SANS of Intrinsically Disordered Protein Complexes: Applied to MCM. Biophys J. 2011. Dec 21: 2999-3007 49. Abdul Latif Khan, Muhammad Hamayun, Ramalingam Radhakrishnan, Muhammad Waqas, Sang-Mo Kang, Yoon-Ha Kim, Jae-Ho Shin, Yeon-Sik Choo, Jong-Guk Kim and In-Jung Lee. Mutualistic association of Paecilomyces formosus LHL10 offers thermotolerance to Cucumis sativus. Antonie van Leeuwenhoek Journal of Microbiology. 2012. 101: 267-279 48. Eun-Kyung Jang, Ihsan Ullah, Min-Sung Kim, Kyeong-Yeoll Lee, Jae-Ho Shin. Isolation and characterization of the entomopathogenic bacterium, Photorhabdus temperata producing a heat stable insecticidal toxin. Jounal of plant diseases and protection. 2011. 118(5): 178-184 47. Young-Hyun You, Hyeokjun Yoon, Gil Seong Lee, Ju-Ri Woo, Jae-Ho Shin, In-Jung Lee, Soon-Ok Rim, Yeon-Sik Choo, Jong-Guk Kim. Diversity and Plant Growth-Promotion of Endophytic Fungi Isolated from the Roots of Plants in Dokdo Islands. Journal of Life Science 2011. Jul 21(7): 923-1066 46. Yam Kumar Shrestha, Eun-Kyung Jang, Yeon-Su Yu, Mijo Kwon, Jae-Ho Shin and Kyeong-Yeoll Lee. Oral toxicity of symbiotic bacteria Photorhabdus spp. against immature stages of insects. Journal of Asia-Pacific Entomology. 2010, Oct, 25. 45. Catherine W. Rico, Mi Young Kang, Jae-Ho Shin, and In Chul Um. Cholesterol-lowering Action and Antioxidative Effects of Microbial Gum in C57BL/6N Mice Fed a High Fat Diet. Biotechnol. Bioprocess Eng. 2011, Mar 16(1): 167-172. (2010) 44. Kab-Sik Shin, Young-Hwan Jeon, Hyo-Young Kim, Jung-In Hwang, Sangman Lee, Jae-Ho Shin and Jang-Eok Kim. Degradation of Fungicide Tolclofos-methyl by Chemical Treatment. Korean J Environ. Agric. 2010. Dec 30, 29(4): 396-401. 42. Hyun-Ho Kim, Jai-Hyun So, Jae-Ho Shin, and In-Koo Rhee. Role of xylR Gene on the Construction of Xylose-Inducible Expression Vectors Using xylF Promoter of Escherichia coli. J. Korean Soc. Appl. Biol. Chem. 2010. Dec 30, 53(6): 790-797. 41. Jai-Hyun So, Won-Chan Kim, Jae-Ho Shin, Choon-Bal Yu and In-Koo Rhee. Purification and characterization of a β-glucosidase capable of hydrolyzing soybean isoflavone glycosides from Pichia guilliermondii K123-1. Food Science and Biotechnology. 2010, August, 8. 19(5): 1373-1379 40. JANG Eun-Kyung, SHIN Jae-Ho. Insecticidal Toxin and Research Trends of Photorhabdus, Entomopathogenic Bacteria. Korean Society for Microbiology and Biotechnology. 2010, 38 (2): 117-123. 39. Muhammad Hamayun, Sumera Afzal Khan, Abdul Latif Khan, Jae-Ho Shin, Bashir Ahmad, Dong-Hyun Shin and In-Jung Lee. Exogenous Gibberellic Acid Reprograms Soybean to Higher Growth and Salt Stress Tolerance. J. Agric. Food Chem. 2010, May 28, 58 (12): 7226–7232 (2009) 38. Zaw Win Min, Tae-Hwa Kim, Jae-Ho Shin, Sang-Man Lee, and Jang-Eok Kim. Accelerated Effect of Ferric Salts on Degradation of Thiophosphate Fungicide, Tolclofos-methyl by Zerovalent Iron. J. Kor. Soc. Appl. Biol. Chem, 2009, Dec 30, 52(6): 681-687. 37. Haim Yoon, Jang-Eok Kim, Jae-Ho Shin, Jeong Hoe Kim and Sangman Lee. Effect of Phytochelatin Synthase Expression on Degradation of Fungicide Tolclofosmethyl in Mutant Plant and Transformed yeast. Korean Journal of Environmental Agriculture, 2009, Dec 30; 28(4): 409-411. 36. Jai-Hyun So, Duk-Jin Kim, Jae-Ho Shin, Choon-Bal Yu and In-Koo Rhee. Isolation and Characterization of Bacillus cereus A-139 Producing Auxin from East Coast Sand Dunes. Korean Journal of Environmental Agriculture, 2009, Dec 30; 28(4): 447-452. 35. Won-Chan Kim, Jai-Hyun So, Sang-In Kim, Jae-Ho Shin, Kyung-Sik Song, Choon-Bal Yu, Yung-Hee Kho, and In-Koo Rhee. Isolation, Identification, and Characterization of Pichia guilliermondii K123-1 and Candida fermentati SI, Producing Isoflavone β-Glycosidase to Hydrolyze Isoflavone Glycoside Efficiently, from the Korean Traditional Soybean Paste. J. Appl. Biol. Chem., 2009, Dec; 52(4): 163-169. 34. Jin-Ho Shin, Eun-Jung Kim, Sun-Ji Park, In-Koo Rhee, and Jae-Ho Shin. Isolation and Production of Antibiotic Substance from Streptomyces sp. S-1110 Antagonistic to Multiple Apple Mold Diseases. Korean Journal of Environmental Agriculture, 2009, Sep 30; 28(3): 289-294. 33. Jae-Ho Shin, Jun-Ho Choi, Oh-Seuk Lee, Young-Mok Kim, Dong-Suk Lee, Yun-Young Kwak, Won-Chan Kim, and In-Koo Rhee. Thermostable Xylanase from Streptomyces thermocyaneoviolaceus for Optimal Production of Xylooligosaccharides. Biotehcnolology and Bioprocess Engineering, 2009, Aug 31; 14: 391-399. 32. Martin Samuels, Gaurav Gulati, Jae-Ho Shin, Rejoice Opara, Elizabeth McSweeney, Matt Sekedat, Stephen Long, Zvi Kelman, and David Jeruzalmi. A biochemically active MCM-like helicase in Bacillus cereus. Nucleic Acids Res., 2009 July; 37(13): 4441–4452 31. Michiyo Tanikawa, Tae Shin Kim, Kiyoshi Okuda, Zae Young Ryoo, Soo Bong Park, Jae Ho Shin, Choon Keun Park, and Dong Seok Lee. Cell-type specificity of interleukins 1α and 1β on prostaglandin and plasminogen activator production in bovine endometrial cells, Animal Reproduction Science, 2009, Aug 01; 114: 32-42. 30. Lam Hoang, Gil-Jae Joo, Won-Chan Kim, Eun-Ju Yang, Sang-In Kim, Sang-Man Lee, Jae-Ho Shin, In-Koo Rhee, and Kyung-Sik Song. Growth Inhibitors of Lettuce Seedlings from Curvibacter sp. GA75-1 Kor. J. Hort. Sci. Technol. 2009, Jun 1; 27(2):319-324. 29. Jae-Ho Shin, Gun-Young Heo and Zvi Kelman. The Methanothermobacter thermautotrophicus MCM helicase is active as a hexameric ring. Journal of Biological Chemistry, 2009, Jan 2; 284(1) 540-546. (2008) 28. Jae-Ho Shin, Yunyoung Kwak, Won-Chan Kim, Jai-Hyun So, Hyun-Soo Shin, Jong-Woo Park, Tae-Hwa Kim, Jang-Eok Kim, and In-Koo Rhee. Isolation of endosulfan degrading bacteria and their degradation characteristics. Korean Journal of Environmental Agriculture, 2008, Sep 30; 27(3) 292-297 27. Jae-Ho Shin. Helicase translocation assay method using avidin and biotinylated nucleotides. Biotechnology Letters, 2008, Nov.01, 30(11):2007-2012 26. Andrea Farina, Jae-Ho Shin, Do-Hyung Kim, Vladimir P. Bermudez, Zvi Kelman, Yeon-Soo Seo, and Jerard Hurwitz. Studies with the human cohesin establishment factor, ChlR1; its association with CTF18-RFC and FEN1. Journal of Biological Chemistry, 2008, Jul 25; 283(30) 20925-20936. 25. Jae-Ho Shin, Gun-Young Heo, and Zvi Kelman. The Methanothermobacter thermautotrophicus Cdc6-2 proteins, the putative helicase loader, dissociate the MCM helicase. Journal of Bacteriology, 2008, June 190(11): 4091-4094. 24. Gun-Young Heo, Won-Chan Kim, Gil-Jae Joo, Yun-Young Kwak, Jae-Ho Shin, Dong-Hyun Roh, Heui-Dong Park, and In-Koo Rhee. Deletion of xylR Gene Enhances Expression of Xylose Isomerase in Streptomyces lividans TK24. Journal of Microbiology and Biotechnology. 2008. May 28; 18(5): 837-844. (2007) 23. Jeong-Hwa Choi, Wan-Taek Im, Qing-Mei Liu, Jae-Soo Yoo, Jae-Ho Shin, Sung-Keun Rhee and Dong-Hyun Roh. Planococcus donghaensis sp. nov., a starchdegrading bacterium isolated from the East Sea, South Korea. International Journal of Systematic and Evolutionary Microbiology, 2007, Nov; 57:2645–2650. 22. Young-Mog Kim, Kunbawui Park, Won-Chan Kim, Jae-Ho Shin, Jang-Eok Kim, Heui-Dong Park and In-Koo Rhee. Cloning and Chracterization of a Catechol-Degrading Gene Cluster from 3,4-dichloroaniline Degrading Bacterium Pseudomonas sp. KB35B. Journal of Agricultural and Food Chemistry, 2007 Jun; 55:4722-4727 21. Jae-Ho Shin, Thomas J. Santangelo, Yunwei Xie, John N. Reeve and Zvi Kelman. Archaeal Minichromosome Maintenance (MCM) Helicase Can Unwind DNA Bound by Archaeal Histones and Transcription Factors. Journal of Biological Chemistry. 2007 Feb 16; 282(7):4908-15 (Before KNU until 2006) 20. Jae-Ho Shin and Zvi Kelman. DNA unwinding assay using streptavidin-bound oligonucleotides. BMC Molecular Biology. 2006 Nov 28; 7:43 19. Gyri Teien Haugland, Jae-Ho Shin, Nils-Kare Birkeland and Zvi Kelman. Stimulation of MCM helicase activity by a Cdc6 protein in the archaeon Thermoplasma acidophilum. Nucleic Acids Research. 2006 Nov 15; 34(21):6337-44. * These two authors contributed equally to this work 18. Jae-Ho Shin, and Zvi Kelman. The replicative helicases of bacteria, archaea and eukarya can unwind RNA-DNA hybrid substrates. Journal of Biological Chemistry. 2006 Sep 15; 281(37):26914-26921 17. Jae-Ho Shin, Rachel Mauro, Eugene Melamud and Rajesh Kasiviswanathan. Cloning and partial characterization of the Methanococcoides burtonii minichromosome maintenance (MCM) helicase. Bios. 2006 May; 77(2):37-41 16. Rajesh Kasiviswanathan, Jae-Ho Shin and Zvi Kelman. DNA Binding by the Methanothermobacter thermautotrophicus Cdc6 Protein Is Inhibited by the Minichromosome Maintenance Helicase. Journal of Bacteriology. 2006 Jun; 188(12):4577-4580 15. Jun-Ho Choi, Oh-Seuk Lee, Jae-Ho Shin, Yun-Young Kwak, Young-Mog Kim and In-Koo Rhee. Thermostable Xylanase Encoded by xynA of Streptomyces thermocyaneoviolaceus: Cloning, Purification, Characterization and Production of Xylooligosaccharides. Journal of Microbiology and Biotechnology. 2006 Jan 28; 16(1) 57-63 14. Rajesh Kasiviswanathan, Jae-Ho Shin and Zvi Kelman. Interaction between the archaeal Cdc6 and MCM proteins modulate their biochemical properties. Nucleic Acids Research. 2005 Sep 8; 33(15):4940-50 13. Gil-Jae Joo, Jae-Ho Shin, Gun-Young Heo, Young-Mog Kim and In-Koo Rhee. Molecular Cloning and Expression of a Thermostable Xylose (Glucose) Isomerase Gene, xylA, from Streptomyces chibaensis J-59. Journal of Microbiology. 2005 Feb; 43(1):34-37 12. Yen-Ju Chen, Xiong Yu, Rajesh Kasiviswanathan, Jae-Ho Shin, Zvi Kelman, and Edward H. Egelman. Structural polymorphism of Methanothermobacter thermautotrophicus MCM. Journal of Molecular Biology. 2005 Feb 18; 346(2):389-94 11. Jae-Ho Shin, John N. Reeve and Zvi Kelman. Use of a restriction enzyme-digested PCR product as substrate for helicase assays. Nucleic Acids Research. 2005 Jan 13; 33(1):e8 10. Kap Lim, Elif Sarikaya, Andrey Galkin, Wojciech Krajewski, Sadhana Pullalarevu, Jae-Ho Shin, Zvi Kelman, Andrew Howard, and Osnat Herzberg. Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: a protein with no known sequence homologues. Proteins: Structure, Function, and Bioinformatics. 2004 Aug 15; 56(3):564-71 9. Rajesh Kasiviswanathan, Jae-Ho Shin, Eugene Merlamud, and Zvi Kelman. Biochemical characterization of the Methanothermobacter thermautotrophicus minichromosome maintenance (MCM) helicase N-terminal domains. Journal of Biological Chemistry. 2004 Jul 2; 279(27):28358-66 8. Soo-Hyun Lee, Jae-Ho Shin, Jun-Ho Choi, Jong-Woo Park, Jang-Eok Kim, and In-Koo Rhee. Isolation and Chracterization of Chlorothalonil-dissipating Bacteria from Soil. Korean Journal of Microbiology and Biotechnology. 2004 Mar; 32(1):96-100 7. Jae-Ho Shin, Yun Jiang, Beatrice Grabowski, Jerard Hurwitz, and Zvi Kelman. Substrate requirements for duplex DNA translocation by the eukaryal and archaeal minichromosome maintenance helicases. Journal of Biological Chemistry. 2003 Dec 5; 278(49):49053-62 6. Jae-Ho Shin, Beatrice Grabowski, Rajesh Kasiviswanathan, Stephen D. Bell, and Zvi Kelman. Regulation of minichromosome maintenance helicase activity by Cdc6. Journal of Biological Chemistry. 2003 Sep 26; 278(39):38059-67 5. Jae-Ho Shin, Young-Mog Kim, Jong-Woo Park, Jang-Eok Kim, and In-Koo Rhee, Resistance of Saccharomyces cerevisiae to fungicide chlorothalonil. Journal of Microbiology. 2003 Sep; 41(3):219-223 4. Jae-Ho Shin, Dong-Hyun Roh, Gun-Young Heo, Gil-Jae Joo, and In-Koo Rhee. Purification and Characterization of a Regulatory Protein XylR in the D-xylose Operon from Escherichia coli. Journal of Microbiology and Biotechnology. 2001 Dec; 11(6):1002-1010 3. Gil-Jae Joo, Jae-Ho Shin, Gun-Young Heo, Yun-Young Kwak, Jun-Ho Choi, and In-Koo Rhee. Purification and Characterization of a Thermostable Xylose (Glucose) Isomerase from Streptomyces chibaensis J-59. Agricultural Chemistry and Biotechnology. 2001; 44:113-118 2. Seung-Hwan Kim, Oon-Chan Chung, Im-Sun Woo, Jae-Ho Shin, Dong-Hyun Rho, In-Koo Rhee, and Heui-Dong Park. Fermentation and Sporulation Characteristics of Saccharomyces cerevisiae SHY111 Isolated from Korean Traditional Rice Wine. Journal of Microbiology and Biotechnology. 2000; 10:776-783 1. Heui-Dong Park, Seung-Hwan Kim, Jae-Ho Shin, and In-Koo Rhee. Genetic Analysis of Alcohol Yeasts Isolated from Korean Traditional Liquor by Polymerase Chain Reaction. Journal of Microbiology and Biotechnology. 1999 Dec; 9(6):744-750 Book Chapters 1. Jae-Ho Shin, Lori Kelman, and Zvi Kelman. DNA replication in thermophiles. In Thermophiles : Biology and Technology at High Temperature ( Frank Robb, Garo Antranikian, Dennis Grogan, and Arnold Driessen eds.) Taylor & Francis CRC Press. 2007. ISBN: 9780849392146 link 2. 주우홍, 신재호 외. 미생물학입문 2판(번역). 월드사이언스, 2009. ISBN: 9788958811411 3. 주우홍, 신재호 외. 미생물학입문 3판(번역). 월드사이언스, 2013. ISBN: 9788958812227 4. 김병홍, 신재호 외. 미생물생리학 4판. 아카데미서적, 2013. ISBN: 9788976162724 5. 주우홍, 신재호 외. 미생물학입문 4판(번역). 월드사이언스, 2017. ISBN: 9788958812227 6. 주우홍, 신재호 외. 미생물학입문 5판(번역). 월드사이언스, 2022. ISBN: 9788958812227

PUBLICATIONS

Last update at 2024.01.04.

Peer-reviewed articles

Total journal rejection counts since 2007 : 112

Total funding rejection counts since 2007 (total funding application counts) : 62 (97)

Click here to see the full list of articles through the google scholar

(2023)

220) Vineet Singh, Yeong-Jun Park, GyuDae Lee, Tatsuya Unno* & Jae-Ho Shin* (2023) Dietary regulations for microbiota dysbiosis among post-menopausal women with type 2 diabetes, Critical Reviews in Food Science and Nutrition, DOI: 10.1080/10408398.2022.2076651

219) Andargie, Y. E., Lee, G., Jeong, M., Tagele, S. B., & Shin, J. H. (2023) Deciphering Key Factors in Pathogen-Suppressive Microbiome Assembly in the Rhizosphere. Frontiers in Plant Science, 14, 1301698.

218) Min-Ji Kim, Dayun Kang, GyuDae Lee, Kyeongnam Kim, Jinnam Kim, Jae-Ho Shin, Seungjun Lee (co-corresponding) Interplays between cyanobacterial blooms and antibiotic resistance genes, Environment International, Volume 181, (2023) 108268

217) Son, Hyunwoo & Klingaite, Justina & Park, Sihyun & Shin, Jae-Ho. (2023). Exploring the role and characterization of Burkholderia cepacia CD2: a promising eco-friendly microbial fertilizer isolated from long-term chemical fertilizer-free soil. Journal of Applied Biological Chemistry. (2023) 66:53, 394−403

216) Kibaek Lee, Yeong-Jun Park, Tahir Iqbal, Hyeona Park, YeonGyun Jung, Jae-Ho Shin, Kwang-Ho Choo, Does quorum quenching matter to microbial community dynamics in long-term membrane bioreactor operation?, Water Research, Volume 244, 2023, 120473,

215) Jo Y, Sliti A, Shin J. Complete Genome Sequence of Priestia megaterium S1, Isolated from the Soybean Soil. Microbiol. Biotechnol. Lett 2023; 51:300-302.

214) Sliti A, Kim M, Lee G, Park Y, Shin J. Whole-Genome Sequence of Priestia aryabhattai Strain S2 Isolated from the Rhizosphere of Soybean (Glycine max). Microbiol. Biotechnol. Lett 2023; 51:296-299.

213) Park S, Lee G, Kim I, Jeong Y, Shin J. Complete Genome Sequence of the Enterobacter asburiae IK3 Isolated from a Soybean (Glycine max) Rhizosphere. Microbiol. Biotechnol. Lett 2023; 51:306-308.

212) Lim K, Jo H, Ibal JC, Kim M, Kim H, Lee D, Kang S, Shin J. Complete Genome Sequence of Priestia megaterium Hyangyak-01 Isolated from Rhizosphere Soil of Centella asiatica. Microbiol. Biotechnol. Lett 2023; 51:303-305.

211) Jo, YoungJae, GyuDae Lee, Sajjad Ahmad, HyunWoo Son, Min-Ji Kim, Amani Sliti, Seungjun Lee, Kyeongnam Kim, Sung-Eun Lee, and Jae-Ho Shin. (2023) "The Alteration of the Gut Microbiome during Ramadan Offers a Novel Perspective on Ramadan Fasting: A Pilot Study" Microorganisms 11, no. 8: 2106.

210) Kim J, Lee G, Han S, Kim MJ, Shin JH, Lee S. (2023) Microbial communities in aerosol generated from cyanobacterial bloom-affected freshwater bodies: an exploratory study in Nakdong River, South Korea. Front Microbiol.

209) Tino Bashizi, Min-Ji Kim, GyuDae Lee, Setu Bazie Tagele, Jae-Ho Shin (2023) Whole-Genome Sequence of Pseudomonas frederiksbergensis Strain A6, Isolated from the Rhizosphere of Pepper (Capsicum annuum L.) MRA ASM e00229-23

208) Jo, HyungWoo, Kyeongmo Lim, Jerald Conrad Ibal, Min-Chul Kim, Hye-Been Kim, Chaeyun Baek, Young Mok Heo, Haeun Lee, Seunghyun Kang, Dong-Geol Lee, and Jae-Ho Shin. (2023) "Growth Increase in the Herbaceous Plant Centella asiatica by the Plant Growth-Promoting Rhizobacteria Priestia megaterium HyangYak-01" Plants 12, no. 13: 2398.

207) Park, C. E., Cho, B. J., Kim, M. J., Kim, M. C., Park, M. K., Son, J. I., ... & Shin, J. H. (2023). Ecoinformatic Analysis of the Gut Ecological Diversity of Wild and Captive Long-Tailed Gorals Using Improved ITS2 Region Primers to Support Their Conservation. Microorganisms, 11(6), 1368

206) Kim, R. H., Tagele, S. B., Jeong, M., Jung, D. R., Lee, D., Park, T., ... & Shin, J. H. (2023). Spinach (Spinacia oleracea) as green manure modifies the soil nutrients and microbiota structure for enhanced pepper productivity. Scientific Reports, 13(1), 4140

205) Hwang YJ, Lee SY, Son JS, Youn JS, Lee W, Shin JH, Lee MH, Ghim SY. Microbacterium elymi sp. nov., Isolated from the Rhizospheric Soil of Elymus tsukushiensis, a Plant Native to the Dokdo Islands, Republic of Korea. J Microbiol Biotechnol. (2023) Feb 28;33(2):188-194.

204) Tagele, S.B., Kim, R.H., Jeong, M., Lim, K., Jung, D.R., Lee, D. Kim, W., and Shin, J.H. (2023) Soil Amendment with Cow Dung Modifies the Soil Nutrition and Microbiota to Reduce the Ginseng Replanting Problem. Frontiers in Plant Science, 14, p.130.

203) Jeong, M., Tagele, S.B., Kim, M.J., Ko, S.H., Kim, K.S., Koh, J.G., Jung, D.R., Jo, Y., Jung, Y., Park, Y.J., Kim, M.S. and Shin, J.H. (2023) The Death of Korean Fir (Abies koreana) Affects Soil Symbiotic Fungal Microbiome: Preliminary Findings. Frontiers in Forests and Global Change, 5, p.289.

202) Singh, V., Lee, G., Son, H., Koh, H., Kim, E.S., Unno, T. and Shin, J.H. (2023) Butyrate producers,“The Sentinel of Gut”: their intestinal significance with and beyond butyrate, and prospective use as microbial therapeutics. Frontiers in Microbiology, 13, p.5426

201) Park, Y. J., Kang, G. U., Jeong, M., Singh, V., Kim, J., Lee, K., ... & Shin, J. H. (2023) Bacterial Profiles of Brain in Downer Cattle with Unknown Etiology. Microorganisms, 11(1), 98.

(2022)

200) Singh, V., Lee, G., Son, H., Amani, S., Baunthiyal, M. and Shin, J.H. (2022) Anti-diabetic prospects of dietary bio-actives of millets and the significance of the gut microbiota: A case of finger millet. Frontiers in Nutrition, 9, p.3154.

199) Tagele, S. B., Kim, R. H., Jeong, M., Jung, D. R., Lee, D., & Shin, J. H. (2022). An optimized biofumigant improves pepper yield without exerting detrimental effects on soil microbial diversity. Chemical and Biological Technologies in Agriculture, 9(1), 99.

198) Jung, D. R., Yoo, H. Y., Kim, M., Singh, V., Park, S. H., Jeong, M., Park, B. J. & Shin, J. H. (2022) Comparative Analysis of Scalp and Gut Microbiome in Androgenetic Alopecia: A Korean Cross-sectional Study. Frontiers in Microbiology, 13:1076242

197) Jo, YoungJae, Da-Ryung Jung, Tae-Hyung Park, Dokyung Lee, Min-Kyu Park, Kyeongmo Lim, and Jae-Ho Shin. (2022) "Changes in Microbial Community Structure in Response to Gummosis in Peach Tree Bark" Plants 11, no. 21: 2834.

196) Kim, M. J., Park, T., Jeong, M., Lee, G., Jung, D. R., & Shin, J. H. (2022). Complete Genome Sequence of Bacillus amyloliquefaciens KNU-28 Isolated from Peach Leaves (Prunus Persica [L.] Batsch). Microbiology Resource Announcements, 11(10), e00734-22.

195) Kim, M. J., Park, T., Jung, D. R., Lee, G., & Shin, J. H. (2022). 옥스포드 나노포어 시퀀싱 데이터로 조립한 Bacillus inaquosorum 1HC-NA 의 전장 유전체. Korean Journal of Microbiology, 58(3), 194-196.

194) Ibal, J. C., Park, Y. J., Park, M. K., Lee, J., Kim, M. C., & Shin, J. H. (2022). Review of the Current State of Freely Accessible Web Tools for the Analysis of 16S rRNA Sequencing of the Gut Microbiome. International Journal of Molecular Sciences, 23(18), 10865.

193) Singh, V., Son, H., Lee, G., Lee, S., Unno, T., & Shin, J. H. Role, Relevance, and Possibilities of In vitro fermentation models in human dietary, and gut‐microbial studies. Biotechnology and Bioengineering. 119(11), 3044-3061.

192) Kang, G. U., Park, S., Jung, Y., Jee, J. J., Kim, M. S., Lee, S.,Lee, D., & Jae-Ho Shin, Koh, H. Exploration of Potential Gut Microbiota-Derived Biomarkers to Predict the Success of Fecal Microbiota Transplantation in Ulcerative Colitis: A Prospective Cohort in Korea. Gut and Liver. 16(5), 775-785

191) Fentie, E. G., Jeong, M., Emire, S. A., Demsash, H. D., Kim, M. C., Lim, K., & Shin, J. H. (2022). Development of mixed starter culture for the fermentation of Ethiopian honey wine, Tej. Scientific Reports, 12(1), 1-15

190) Vineet Singh, Yeong-Jun Park, GyuDae Lee, Tatsuya Unno* & Jae-Ho Shin* (2022): Dietary regulations for microbiota dysbiosis among post-menopausal women with type 2 diabetes, Critical Reviews in Food Science and Nutrition

188) Zhang, X., Park, H., Park, Y. J., Lee, K., Yu, H., Shin, J. H., & Choo, K. H. (2022). Photolytic quorum quenching effects on the microbial communities and functional gene expressions in membrane bioreactors. Science of The Total Environment, 152017

187) Fentie, E. G., Jeong, M., Emire, S. A., Demsash, H. D., Kim, M. A., & Shin, J. H. (2022). Fermentation dynamics of spontaneously fermented Ethiopian honey wine, Tej. LWT, 112927.

186) Fentie, E. G., Jeong, M., Emire, S. A., Demsash, H. D., Kim, M. A. & Shin, J. H. (2022). Physicochemical properties, antioxidant activities and microbial communities of Ethiopian honey wine, Tej. Food Research International, 110765.

185) Azimirad, M., Jo, Y., Kim, M. S., Jeong, M., Shahrokh, S., Aghdaei, H. A., ... & Shin, J. H. (2022). Alterations and Prediction of Functional Profiles of Gut Microbiota After Fecal Microbiota Transplantation for Iranian Recurrent Clostridioides difficile Infection with Underlying Inflammatory Bowel Disease: A Pilot Study. Journal of Inflammation Research, 15, 105-116.

(2021)

184) Sung, J. Y., Lee, Y. J., Cho, Y. J., Shin, M. N., Lee, S. J., Lee, H. S., ... Shin, J. H. & Lee, D. W. (2021). A Large‐Scale Metagenomic Study for Enzyme Profiles Using the Focused Identification of the NGS‐Based Definitive Enzyme Research (FINDER) Strategy. Biotechnology and Bioengineering. 2021-11,

183) Ibal, J. C., Park, M. K., Park, G. S., Jung, B. K., Park, T. H., Kim, M. S., Kang, K. U, Park, Y. J. & Shin, J. H. (2021). Use of Acyl-Homoserine Lactones Leads to Improved Growth of Ginseng Seedlings and Shifts in Soil Microbiome Structure. Agronomy, 11(11), 2177

182) Lee, S. Y., Kim, J. H., Kim, Y. J., Kim, Y. S., Roh, S. G., Lee, K. H., Kim, H. J., Shin, Jae-Ho & Oem, J. K. (2021). Astrovirus Infection in Cattle with Nonsuppurative Meningoencephalitis in South Korea. Viruses, 13(10), 1941. 2021-09-28

181) Min-Sueng Kim, Sang-Ho Kim, Minsoo Jeong, Min-Kyu Park, YoungJae Jo, GI-Ung Kang, Da-Ryung Jung, Chang-Il Lee and Jae-Ho Shin. (2021) Fermented Coffee Grounds Diminish Livestock Odors: A Microbiome Study. Agronomy, 11(10), 1914. 2021-09-24

180) Setu Bazie Tagele, Ryeong-Hui Kim, Jae-Ho Shin (2021) Interactions between Brassica Biofumigants and Soil Microbiota: Causes and Impacts. Journal of Agricultural and Food Chemistry. September 22, 2021, 10.1021/acs.jafc.1c03776

179) Park, Chang E., Bum-Joon Cho, Min-Ji Kim, Hee C. Park, and Jae-Ho Shin. (2021) "Geographical Relationships between Long-Tailed Goral (Naemorhedus caudatus) Populations Based on Gut Microbiome Analysis" Microorganisms 9, no. 9: 2002.

178) Lee, G., Kim, M. J., & Shin, J. H. (2021). Data on Complete Genome Sequence and Annotation of Paenibacillus sonchi LMG 24727T. Data in Brief, 107271. 8 August 2021, https://doi.org/10.1016/j.dib.2021.107271

177) Lee, S. Y., Son, J. S., Hwang, Y. J., Shin, J. H., & Ghim, S. Y. (2021). Metabacillus elymi sp. nov., isolated from the Rhizosphere of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea. Antonie van Leeuwenhoek, 114(10), 1709-1719.

176) Azizoglu, U., Yilmaz, N., Simsek, O., Ibal, J. C., Tagele, S. B., & Shin, J. H. (2021). The fate of plant growth-promoting rhizobacteria in soilless agriculture: future perspectives. 3 Biotech, 11(8), 1-13.

175) Gi-Ung Kang, Jerald Conrad Ibal, Seungjun Lee, Myeong Hwan Jang, Yeong-Jun Park, Min-Chul Kim, Tae-Hyung Park, Min-Sueng Kim, Ryeong-Hui Kim, and Jae-Ho Shin. Alteration of the Soil Microbiota in Ginseng Rusty Roots: Application of Machine Learning Algorithm to Explore Potential Biomarkers for Diagnostic and Predictive Analytics, J. Agric. Food Chem. 2021 Jul 28;69(29):8298-8306.

174) Min-Ji Kim, Setu Bazie Tagele, HyungWoo Jo, Min-Chul Kim, YeonGyun Jung, Yeong-Jun Park, Jai-Hyun So, Hae Jin Kim, Ho Jin Kim, Dong-Geol Lee, Seunghyun Kang, and Jae-Ho Shin. Effect of a Bioconverted Product of Lotus corniculatus Seed on the Axillary Microbiome and Body Odor. Scientific reports. 11, Article number: 10138 (2021)

173) Tae-Kyung Hwang, Yeong-Jun Park, Min-Ji Kim, Min-Kyu Park , Min-Chul Kim , Minsoo Jung, HyunWoo Son, Da-Ryung Jung, Tae-Il Lee, Soon-Ki Park*, and Jae-Ho Shin*. Isolation of Bacillus aryabhattai GW320 from the Cucumber Rhizospheric Soil and Evaluation of Plant Growth Promoting Activity. 한국토양비료학회지 ,제54권 제1호 126 - 139

172) Tae-Kyung Hwang, Yeong-Jun Park, Min-Ji Kim, Gyu-Dae Lee, Ryeong-Hui Kim, Tae-Il Lee, Soon-Ki Park, and Jae-Ho Shin. Whole-genome sequence of Bacillus aryabhattai strain GW320, a potential plant growth-promoting rhizobacterium from Cucumis sativus L. rhizospheric soil. Korean J. Microbiol. 2021;57(1):62-65

171) Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong* and Jae-Ho Shin*. Potential Association between Vaginal Microbiota and Cervical Carcinogenesis in Korean Women: A Cohort Study. Microorganisms (2021)Vol 9(2) 294

(2020)

170) Min-Ji Kim, Yeong-Jun Park, Min-Kyu Park, Chang Eon Park, YoungJae Jo, Setu Bazie Tagele, and Jae-Ho Shin. Complete genome sequence of Labrys sp. KNU-23 isolated from ginseng soil in the Republic of Korea. Korean Journal of Microbiology (2020) Vol. 56, No. 4, pp. 410-412.

169) Min-Kyu Park, Yeong-Jun Park, MinJi Kim, Min-Chul Kim, Jerald Conrad Ibal, Gi-Ung Kang, Gyu-Dae Lee, Setu Bazie Tagele, Hyuk-Joon Kwon, Myung-Suk Kang, Min-Ha Kim, Soo-Young Kim, and Jae-Ho Shin. Complete genome sequence of a plant growth-promoting bacterium Pseudarthrobacter sp. NIBRBAC000502772, isolated from shooting range soil in the Republic of Korea. Korean Journal of Microbiology. 제56권 제4호 pp. 390-393

168) Hwang, Ye-Ji, Jin-Soo Son, Soo-Yeong Lee, Min-Ji Kim, Jong Myong Park, Jae-Ho Shin, and Sa-Youl Ghim. "Adhaeribacter radiodurans sp. nov., isolated from the rhizospheric soil of Elymus tsukushiensis, a plant native to the Dokdo Islands, Republic of Korea." International Journal of Systematic and Evolutionary Microbiology (2020): ijsem004612.

167) Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong*, Jae-Ho Shin*. 2020. Dynamics of Fecal Microbiota with and without Invasive Cervical Cancer and its Application in Diagnosis. Cancers 2020,

166) Fentie, E.G.; Emire, S.A.; Demsash, H.D.; Dadi, D.W.; Shin, J.-H. Cereal- and Fruit-Based Ethiopian Traditional Fermented Alcoholic Beverages. Foods 2020, 9, 1781.

165) Lee, Y.H., Kang, G.U., Jeon, S.Y., Tagele, S.B., Pham, H.Q., Kim, M.S., Ahmad, S., Jung, D.R., Park, Y.J., Han, H.S. Shin, J.H. and Jung, G.O., 2020. Vaginal Microbiome-Based Bacterial Signatures for Predicting the Severity of Cervical Intraepithelial Neoplasia. Diagnostics, 10(12), p.1013.

164) Harvey, B.P., Kerfahi, D., Jung, Y., Shin, J.H., Adams, J.M. and Hall-Spencer, J.M., 2020. Ocean acidification alters bacterial communities on marine plastic debris. Marine Pollution Bulletin, 161, p.111749

163) Jung, B.K., Ibal, J.C., Pham, H.Q., Kim, M.C., Park, G.S., Hong, S.J., Jo, H.W., Park, C.E., Choi, S.D., Jung, Y. and Tagele, S.B., Shin, J.H. 2020. Quorum Sensing System Affects the Plant Growth Promotion Traits of Serratia fonticola GS2. Frontiers in Microbiology, 11, p.2746.

162) Kammara, R., Akter, N., Hashim, R., Pham, H.Q., Choi, S.D. and Shin, J.H., 2020. Lactobacillus acidophilus antimicrobial peptide is antagonistic to Aeromonas hydrophila. Frontiers in Microbiology, 11, p.2358. 2020년 10월

161) Jin-Soo Son; Soo-Yeong Lee; Ye-Ji Hwang; Jae-Ho Shin; Sa-Youl Ghim. Microlunatus elymi sp. nov. a novel actinobacterium isolated from the rhizospheric soil of the wild plant Elymus tsukushiensis, IJSEM 2020년 08월 12일

160) Jung, Y.; Tagele, S.B.; Son, H.; Ibal, J.C.; Kerfahi, D.; Yun, H.; Lee, B.; Park, C.Y.; Kim, E.S.; Kim, S.-J.; Shin, J.-H. Modulation of Gut Microbiota in Korean Navy Trainees following a Healthy Lifestyle Change. Microorganisms 2020, 8, 1265.

159) Panida Sittipo, Huy Quang Pham, ChangEon Park, KiUng Kang, Ayeung Jang, Ho Seong Seo and Jae-Ho Shin, Yun Kyung Lee. 2020. Irradiation-induced intestinal damage is recovered by the indigenous gut bacteria Lactobacillus acidophilus. Frontiers in Cellular and Infection Microbiology. August 18 2020.

158) Dhanashree Lokesh, Shilja Choyam, Kammara Rajagopal and Jae Ho Shin. Biochemical Identification and Qualitative determination of Bifidobacteria directly on Petri plate SVOA Microbiology

157) Kim, W., Jeong, C., Seo, B., Nazki, S., Jung, B.K., Khatun, A., Yang, M., Kim, S., Noh, S., Shin, J. and Kim, B., 2020. Characterization of Clostridium novyi isolated from a sow in a sudden death case in Korea. BMC Veterinary Research. 30 Mar 2020

156) HyungWoo Jo, Setu Bazie Tagele, Huy Quang Pham, Min-Chul Kim, SeungDae Choi, Min-Ji Kim, Yeong-Jun Park, Jerald Conrad Ibal, Gun-Seok Park, Jae-Ho Shin. Response of soil bacterial community and pepper plant growth to application of Bacillus thuringiensis KNU-07. Agronomy, 15 April 2020

155) Young Jae Jo, Setu Bazie Tagele, Huy Quang Pham, YeonGyun Jung, Jerald Conrad Ibal, SeungDae Choi, Gi-Ung Kang, Sowon Park, Yunkoo Kang, Seung Kim, Hong Koh and Jae-Ho Shin. In Situ Profiling of the Three Dominant Phyla Within the Human Gut Using TaqMan PCR for Pre-Hospital Diagnosis of Gut Dysbiosis. International Journal of Molecular Sciences, 11 March 2020.

154) Min-Ju Kim, Mi-Kyung Lee, Huy Quang Pham, Myeong Ju Gu, Bohan Zhu, Sung-Hun Son, Dongyup Hahn, Jae-Ho Shin, Jae-Hyuk Yu, Hee-Soo Park, Kap-Hoon Han, The velvet regulator VosA governs survival and secondary metabolism of sexual spores in Aspergillus nidulans, Genes, 2073-4425

153) Eun-Kyung Jang, Byung Kwon Jung, Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, Yeong-Jun Park, Won-Chan Kim, Jae-Ho Shin, Khalid M S Al-Ghamdi, Bassam Oudh Al-Johny, Yasir Anwar, Muhammad Faisal Siddiqui, Ihsan Ullah. "Cloning and expression of the insecticidal toxin gene “tccB” from Photorhabdus temperata M1021 in Escherichia coli expression system." Journal of Asia-Pacific Entomology (2020).

152) Ye-Ji Hwang; Jin-Soo Son; Soo-Yeong Lee; Yuxi He; YoungJae Jo; Shin Jae-Ho; Sa-Youl Ghim. Nocardioides sambongensis sp. nov., isolated from the Dokdo Islands soil. IJSEM vol. 70

151) Chang Eon Park, Yeong-Jun Park , Min-Chul Kim, Min-Kyu Park, YeonGyun Jung, Seung-Dae Choi, YoungJae Jo, Gi-Ung Kang, Min-Ji Kim, Qing X. Li, Brandon A. Yoza, Kgu-Hwan Kim, Hee Cheon Park & Jae-Ho Shin "The first complete mitochondrial genome sequence of the Korean endemic catfish Silurus microdorsalis (Actinopteri, Siluriformes, Siluridae)." Mitochondrial DNA Part B 5, no. 1 (2020): 131-132.

(2019)

150) Park, Min-Kyu, Yeong-Jun Park, Min-Chul Kim, Gi-Ung Kang, MinJi Kim, YoungJae Jo, Hyuk-Joon Kwon, Myung-Suk Kang , Min-Ha Kim , Soo-Young Kim, and Jae-Ho Shin "한국의 사격장 토양에서 분리된 Pseudarthrobacter sp. NIBRBAC000502771 의 유전체 서열." Korean Journal of Microbiology 55, no. 4 (2019): 419-421.

149) Dhanashree Lokesh, Kammara Rajagopal, Jae Ho Shin. Multidrug Resistant Probiotics as an Alternative to Antibiotic Probiotic therapy. Journal of Infectiology. 2019; 2(5):1-4.

148) Alexis Nzila, Shaikh Abdur Razzak, Saravanan Sankara, Mazen K. Nazal, Marwan Al-Momani, Gi-Ung Kang, Jerald Conrad Ibal, Jae-Ho Shin. Characterisation and microbial community analysis of lipid utilising microorganisms for biogas formation. PLOS one, Nov 8, 2019 / https://doi.org/10.1371/journal.pone.0224989

147) Abdur Rahim Khan, L. G. Reichmann, J. C. Ibal, J. H. Shin, Y. Liu, H. Collins, B. LePage, and Norman Terry. Variation in pickleweed root-associated microbial communities at different locations of a saline solid waste management unit contaminated with petroleum hydrocarbons. 2019 Oct 3, PLOS ONE https://doi.org/10.1371/journal.pone.0222901

146) Shilja Choyam, Alok Kumar Srivastava, Jae-Ho Shin and Rajagopal Kammara. Ocins for Food Safety. Front. Microbiol., 02 August 2019 | https://doi.org/10.3389/fmicb.2019.01736

145) Weerasekara, Nuwan Asanka, Sung-Geun Woo, Craig Criddle, Tahir Iqbal, Kibaek Lee, Yeong-Jun Park, Jae-Ho Shin, and Kwang-Ho Choo. "Clues to membrane fouling hidden within the microbial communities of membrane bioreactors." Environmental Science: Water Research & Technology (2019). 5, 1389-1399.

144) YeonGyun Jung, Byung Kwon Jung, Chang Eon Park, Jerald Conrad Ibal, Sang-Jun Kim, and Jae-Ho Shin Complete genome sequence of Microbacterium aurum strain KACC 15219T, a carbohydrate-degrading bacterium. Korean J. of Microbiol. 2019 Jun; 55(2) 164-166

143) Kim DR, Jeon CW, Shin JH, Weller DM, Thomashow L, Kwak YS. Function and distribution of a lantipeptide in strawberry Fusarium wilt disease-suppressive soils. Molecular Plant-Microbe Interactions. 2019 Mar;32(3):306-312

142) Park, Chang Eon, Min-Chul Kim, Jerald Conrad Pernites Ibal, Huy Quang Pham, Hee Cheon Park, and Jae-Ho Shin. "The complete mitochondrial genome sequence of Dendrocopos major (Aves, Piciformes, Picidae)." Mitochondrial DNA Part B 4, no. 1 (2019): 777-778.

141) Park, Chang Eon, Min-Chul Kim, Jerald Conrad Pernites Ibal, Huy Quang Pham, Hee Cheon Park, and Jae-Ho Shin. "The complete mitochondrial genome sequence of Otus bakkamoena (Aves, Strigiformes, Strigidae)." Mitochondrial DNA Part B 4, no. 1 (2019): 775-776.

140) Park, Chang Eon, Min-Chul Kim, Jerald Conrad Pernites Ibal, Huy Quang Pham, Hee Cheon Park, and Jae-Ho Shin. "The complete mitochondrial genome sequence of Otus scops (Aves, Strigiformes, Strigidae)." Mitochondrial DNA Part B 4, no. 1 (2019): 764-765.

139) Park, Chang Eon, Min-Chul Kim, Huy Pham Quang, Hee Cheon Park, and Jae-Ho Shin. "The complete mitochondrial genome sequence of Zoothera aurea (Aves, Passeriformes, Turdidae)." Mitochondrial DNA Part B 4, no. 1 (2019). 797-798

138) Ibal, Jerald Conrad, Huy Quang Pham, Chang Eon Park, and Jae-Ho Shin. "Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification." PLOS ONE 14, no. 2 (2019): e0212090

137) Park, Yeong-Jun, Chang Eon Park, Byung Kwon Jung, Min-Kyu Park, Jerald Conrad Ibal, Sang-Jun Kim, Seok Hyun Lee, Hyun Sook Ko, and Jae-Ho Shin. "The first complete mitochondrial genome sequence of the mud crab Macrophthalmus japonicus (arthropoda, decapoda, macrophthalmidae)." Mitochondrial DNA Part B 4, no. 1 (2019): 259-260.

136) Ibal, Jerald Conrad, Byung Kwon Jung, Chang Eon Park, and Jae-Ho Shin. "Plant growth-promoting rhizobacteria used in South Korea." (2018) Applied Biological Chemistry: 61(6): 709-716.

135) Nzila, Alexis, Byung Kwon Jung, Min-Chul Kim, Jerald Conrad Ibal, Fitri Budiyanto, Musa M. Musa, Assad Thukair, Sang-Jun Kim, and Jae-Ho Shin. "Complete genome sequence of the polycyclic aromatic hydrocarbons biodegrading bacterium Idiomarina piscisalsi strain 10PY1A isolated from oil-contaminated soil." Korean J. Microbiology 54, no. 3 (2018): 289-292

(2018)

134) Yeong-Jun Park, Byung Kwon Jung, Sung-Jun Hong, Gun-Seok Park, Jerald Conrad Ibal, Huy Quang Pham, and Jae-Ho Shin. Expression and characterization of calcium- and zinc-tolerant xylose isomerase from Anoxybacillus kamchatkensis G10. (2018) J. Microbiol. Biotechnol. 28(4):606-612

133) Byung Kwon Jung, Sung-Jun Hong, Gun-Seok Park, Min-Chul Kim, Jae-Ho Shin. Isolation of Burkholderia cepacia JBK9 with plant growth promoting activity while producing pyrrolnitrin antagonistic to plant fungal diseases. (2018) Applied Biological Chemistry 61(2):173-180.

132) Lee, Seung-Chul, Sunhee Lee, Gun-Woo Yoo, Hwan-Won Choi, Yun-Hee Noh, Chang Eon Park, Jae-Ho Shin, In-Joong Yoon, Shien-Young Kang, and Changhee Lee. "Phenotypic and genotypic analyses of an attenuated porcine reproductive and respiratory syndrome virus strain after serial passages in cultured porcine alveolar macrophages." Journal of veterinary science 19, no. 3 (2018): 358-367.

131) Jung BK, Hong SJ, Jo HW, Jung Y, Park YJ, Park CE, Kim MC, Ibal JC, Roh DH, Shin JH. Genome sequencing to develop Paenibacillus donghaensis strain JH8 T (KCTC 13049 T= LMG 23780 T) as a microbial fertilizer and correlation to its plant growth-promoting phenotype. Marine Genomics. 2018 Feb. 37: 39-42

130) Yeong-Jun Park, Chang Eon Park, Seok Hyun Lee, Hyun Sook Ko, Ihsan Ullah, Ui Wook Hwang and Jae-Ho Shin (2018). The complete mitochondrial genome sequence of the intertidal crab Parasesarma tripectinis (Arthropoda, Decapoda, Sesarmidae). Mitochondrial DNA Part B. 3(1), 193-194.

129) Koh, Hong, Gun-Seok Park, Sun-Mi Shin, Chang Eon Park, Seung Kim, Seok Joo Han, Huy Quang Pham, Jae-Ho Shin*, and Dong-Woo Lee*. "Mitochondrial Mutations in Cholestatic Liver Disease with Biliary Atresia." Scientific reports 8, no. 1 (2018): 905. *co-corresponding authors

(2017)

128) Park, Yeong-Jun & Park, Changeon & Jung, Byung Kwon & Conrad Ibal, Jerald & Jung, YeonGyun & Hong, Sung-Jun & Park, Gun-Seok & Lee, Seok Hyun & Ko, Hyun Sook & Shin, Jae-Ho. (2017). The first complete mitochondrial genome sequence of the leucosiid crab Pyrhila pisum (Arthropoda, Decapoda, Leucosiidae). Mitochondrial DNA Part B. 2. 885-886.

127) Park, Changeon & Kim, Min-Chul & Kim, Kgu-Hwan & Cheon Park, Hee & Shin, Jae-Ho. (2017). The complete mitochondrial genome sequence of Liobagrus mediadiposalis (Teleostei, Siluriformes, Amblycipitidae). Mitochondrial DNA Part B. 2. 879-880.

126) Park YJ, Park CE, Hong SJ, Jung BK, Ibal JC, Park GS, Shin JH. The complete mitochondrial genome sequence of the greater wax moth Galleria mellonella (Insecta, Lepidoptera, Pyralidae): sequence and phylogenetic analysis comparison based on whole mitogenome. Mitochondrial DNA Part B. 2017 Dec 20;2(2):714-5.

125) Byung Kwon Jung, Abdur Rahim Khan, Sung-Jun Hong, Gun-Seok Park, Yeong-Jun Park, Ho-Jin Kim, Hwang-Ju Jeon, Muhammad Aaqil Khan, Muhammad Waqas, In-Jung Lee, Sung-Eun Lee, and Jae-Ho Shin Quorum Sensing Activity of Plant Growth-Promoting Rhizobacterium Serratia glossinae GS2 Isolated from the Sesame (Sesamum indicum L.) Rhizosphere. 2017. Ann. Microbiol. 67(9):623-632

124) Park, Gun-Seok, Sung-Jun Hong, Byung Kwon Jung, Seulki Park, Hyewon Jin, Sang-Jae Lee, Jae-Ho Shin, and Han-Seung Lee. "Whole genome sequence of lactic acid bacterium Pediococcus acidilactici strain S1." Brazilian Journal of Microbiology (2017). Jul-Sep;48(3):395-396

123) Lee, Yong-Jik, Min-Kyu Park, Gun-Seok Park, Sang-Jae Lee, Sang Jun Lee, Bradley Seokhan Kim, Jae-Ho Shin, and Dong-Woo Lee. "Complete genome sequence of the thermophilic bacterium Geobacillus subterraneus KCTC 3922 T as a potential denitrifier." Journal of Biotechnology 251 (2017): 141-144.

122) Sung-Jun Hong, Gun-Seok Park, Abdur Rahim Khan, Byung Kwon Jung and Jae-Ho Shin. Draft genome sequence of Pseudomonas taiwanensis strain SJ9, a caprolactam degrader. Brazilian Journal of Microbiology. (2017) Apr 07, 48: 187-188

121) Abdur Rahim Khan, Muhammad Waqas, Ihsan Ullah, Abdul Latif Khan, Muhammad Aaqil Khan, In-Jung Lee, Jae-Ho Shin. Culturable endophytic fungal diversity of cadmium hyperaccumulator Solanum nigrum L. and their role in enhancing phytoremediation. Environ & Exp Botany, 2017 Mar 17; 135:126-35

120) Abdur Rahim Khan, Chang Eon Park, Gun-Seok Park, Young-Jin Seo, Jai-Hyun So, and Jae-Ho Shin. The whole chloroplast genome sequence of black nightshade plant (Solanum nigrum). Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Mar, 28(2):169-170

119) Abdur Rahim Khan, Gun-Seok Park, Sajjad Asaf, Sung-Jun Hong, Byung Kwon Jung, Jae-Ho Shin. Complete genome analysis of Serratia marcescens RSC-14: A plant growth-promoting bacterium that alleviates cadmium stress in host plants. PLoS one, (2017) Feb 10, 12(2) e0171534

118) Abdur Rahim Khan, Ihsan Ullah, Muhammad Waqas, Gun-Seok Park, Abdul Latif Khan, Sung-Jun Hong, Rehman Ali, Byung Kwon Jung, Chang Eon Park, Shafiq Ur-Rehman, In-Jung Lee, Jae-Ho Shin. Host plant growth promotion and cadmium detoxification in Solanum nigrum, mediated by endophytic fungi. Ecotoxicology and Environmental Safety 136 (2017): 180-188.

117) Chang Eon Park*, Gun-Seok Park*, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, and Jae-Ho Shin. The complete mitochondrial genome of Kichulchoia multifasciata (Teleostei, Cypriniformes, Cobitidae), Mitochondrial DNA A DNA Mapp Seq Anal. 28(1) 119-120 * These two authors contributed equally to this work

116) Abdul Latif Khan, Ahmed Al-Harrasi , Sajjad Asaf, Chang Eon Park, Gun-Seok Park, Abdur Rahim Khan, In-Jung Lee, Ahmed Al-Rawahi, Jae-Ho Shin. The First Chloroplast Genome Sequence of Boswellia sacra, a Resin-Producing Plant in Oman. PLoS One. 2017 Jan 13;12(1):e0169794

115) Jung, Byung Kwon, Abdur Rahim Khan, Sung-Jun Hong, Gun-Seok Park, Yeong-Jun Park, Chang Eon Park, Hwang-Ju Jeon, Sung-Eun Lee, and Jae-Ho Shin. "Genomic and phenotypic analyses of Serratia fonticola strain GS2: a rhizobacterium isolated from sesame rhizosphere that promotes plant growth and produces N-acyl homoserine lactone." Journal of Biotechnology 241 (2017): 158-162.

114) Sung-Jun Hong, Chang Eon Park, Gun-Seok Park, Min-Chul Kim, Byung Kwon Jung and Jae-Ho Shin. Draft genome sequence of sulfur-reducing archaeon Thermococcus thioreducens DSM 14981^T. Brazilian Journal of Microbiology. (2017) 48: 3-4

113) Gun-Seok Park, Sung-Jun Hong, Seulki Park, Hyewon Jin, Sang-Jae Lee, Jae-Ho Shin and Han-Seung Lee. Draft genome sequence of alcohol-tolerant bacteria Pediococcus acidilactici strain K3. Brazilian Journal of Microbiology. (2017) 48: 1-2

(2016)

112) Chang Eon Park*, Gun-Seok Park*, Min-Chul Kim, Kgu-Hwan Kim, Hee heon Park and Jae-Ho Shin. The complete mitochondrial genome sequence of Squalidus japonicus coreanus (Teleostei, Cypriniformes, Cyprinidae). Mitochondrial DNA. 27(5):3723-3724

111) Chang Eon Park*, Gun-Seok Park*, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, In-Jung Lee and Jae-Ho Shin. Complete mitochondrial genome of the Korean endemic species Microphysogobio yaluensis (Teleostei, Cypriniformes, Cyprinidae). Mitochondrial DNA Part A, 27(5): 3557-3559.

110) Chang Eon Park*, Gun-Seok Park*, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yeong-Jun Park, Min-Chul Kim, Kgu-Hwan Kim, Hee Cheon Park, In-Jung Lee and Jae-Ho Shin. Complete mitochondrial genome of the endemic species Korean aucha perch Coreoperca herzi (Teleostei, Centrarchiformes, Sinipercidae). Mitochondrial DNA Part A, 27(5): 3493–3495. 2016. 09. * These two authors contributed equally to this work

109) Chang Eon Park*, Gun-Seok Park*, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yung-Jun Park, Jong-Guk Kim, Hee Cheon Park and Jae-Ho Shin. Complete mitochondrial genome of Cygnus olor (Aves, Anseriformes, Anatidae). Mitochondrial DNA Part A, 27(5):3442-3443. 2016. 09. * These two authors contributed equally to this work.

106) Chang Eon Park*, Gun-Seok Park*, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Yung-Jun Park, Jong-Guk Kim, Hee Cheon Park and Jae-Ho Shin. Complete mitochondrial genome of Cygnus cygnus (Aves, Anseriformes, Anatidae). Mitochondrial DNA Part A, 27(4):2907-8. 2016.07. * These two authors contributed equally to this work.

105) Abdul Latif Khan, Ahmed Al-Harrasi, Ahmed Al-Rawahi, Zainab Al-Farsi, Aza Al-Mamari, Muhammad Waqas, Sajjad Asaf, Ali Elyassi, Fazal Mabood, Jae-Ho Shin, In-Jung Lee. Endophytic Fungi from Frankincense Tree Improves Host Growth and Produces Extracellular Enzymes and Indole Acetic Acid. PlosOne. June 30, 2016.

104) Seung-Chul Lee, Hwan-Won Choi, Eeuri Nam, Yun-Hee Noh, Sunhee Lee, Yoo Jin Lee, Gun-Seok Park, Jae-Ho Shin, In-Joong Yoon, Shien-Young Kang, Changhee Lee. Pathogenicity and genetic characteristics associated with cell adaptation of a virulent porcine reproductive and respiratory syndrome virus nsp2 DEL strain CA-2, Veterinary Microbiology (2016) 186, p. 174-188.

103) Sajjad Asaf, Abdul Latif khan; Abdur Rahim Khan; Muhammad Waqas; Sang-Mo Kang; Muhammad Aaqil Khan; Raheem Shahzad; Chang Woo Seo; Jae-Ho Shin; In-Jung Lee. (2016). Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species. PloS one, 11(4), e0152937

102) Mashooq Khan, Abdur Rahim Khan, Jae-Ho Shin and Soo-Young Park. A liquid-crystal-based DNA biosensor for pathogen detection, Scientific Reports (2016) 6, Mar. 03.

101) Gun-Seok Park, Sung-Jun Hong, Byung Kwon Jung, Changhee Lee, Choi Kyu Park, Jae-Ho Shin. The complete genome sequence of a lactic acid bacterium Leuconostoc mesenteroides ssp. dextranicum strain DSM 20484T, J Biotech. (2016) 219, p. 3 – 4.

99) Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, ByungKwon Jung, Jong-Guk Kim, Jae-Ho Shin. An Improved Soil Ball Making Method for the Water Quality Control, Envion. Sci. Pollut. Res (2016) 23:1100-1107

(2015)

98) Irina Khalmuratova,, Hyun Kim, Yoon-Jong Nam, Yoosun Oh, Min-Ji Jeong, Hye-Rim Choi, Young-Hyun You, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, Hyeokjun Yoon and Jong-Guk Kim. (2015). Diversity and Plant Growth Promoting Capacity of Endophytic Fungi Associated with Halophytic Plants from the West Coast of Korea.Mycobiology, 43(4), 373-383.

96) Gun-Seok Park, Sung-Jun Hong, Byung Kwon Jung, Abdur Rahim Khan, Yeong-Jun Park, Chang Eon Park, Ara Lee, Yong-Jik Lee, Dong-Woo Lee, Changhee Lee, Choi Kyu Park, Jae-Ho Shin. Complete genome sequence of a keratin-degrading bacterium Chryseobacterium gallinarum strain DSM 27622T isolated from chicken. Journal of Biotechnology. (2015) 211, p. 66-67

94) Sung-Jun Hong, Gun-Seok Park, Byung Kwon Jung, Abdur Rahim Khan, Yeong-Jun Park, Chang-Hyun Lee, Jae-Ho Shin. Isolation, identification, and characterization of a keratin-degrading bacterium Chryseobacterium sp. P1-3 JABC (2015) 58(3), 247-251

93) Yong-Jik Lee, Haeyoung Jeong, Gun-Seok Park, Sang-Jae Lee, Sang Jun Lee, Min-Kyu Park, Ji-Yeon Kim, Hwan Ku Kang, Jae-Ho Shin and Dong-Woo Lee. Genome sequence of a native-feather degrading extremely thermophilic Eubacterium, Fervidobacterium islandicum AW-1. Standards in Genomic Sciences. (2015) 10:71

92) Abdur Rahim Khan, Ihsan Ullah, Muhammad Waqas, Raheem Shahzad, Sung-Jun Hong, Gun-Seok Park, Byung Kwon Jung, In-Jung Lee, Jae-Ho Shin. Plant growth promoting potential of endophytic fungi isolated from Solanum nigrum leaves. World Journal of Microbiology and Biotechnology. 2015 Sep;31(9):1461-6

91) Khan, A. R., Ullah, I., Khan, A. L., Park, G. S., Waqas, M., Hong, S. J., Jung, B. K., Lee, I. J., Shin, J. H. (2015). Improvement in phytoremediation potential of Solanum nigrum under cadmium contamination through endophytic-assisted Serratia sp. RSC-14 inoculation. Environmental Science and Pollution Research. 2015 Sep;22(18):14032-42.

90) Byung Kwon Jung, Sang-Dal Kim, Abdur Rahim Khan, Jong-Hui Lim, Chang-Hwan An, Yo-Hwan Kim, Jin Ha Song, Sung-Jun Hong, Jae-Ho Shin. Rhizobacterial Communities and Red Pepper (Capsicum annum) Yield under Different Cropping Systems. International Journal of Agriculture and Biology (2015) 17:734‒740

89) Sung-Jun Hong, Gun-Seok Park, Abdur Rahim Khan, Byung Kown Jung, Yeong-Jun Park, Na-Kyung Yoo, Changhee Lee, Choi Kyu Park, and Jae-Ho Shin. Draft genome sequence of caprolactam degrading Pseudomonas putida strain SJ3. Genome Announcement. 2015 Jul-Aug; 3(4): e00810-15.

87) Sung-Jun Hong, Ihsan Ullah, Gun-Seok Park, Byung Kwon Jung, JungBae Choi, Abdur Rahim Khan, Min-Chul Kim and Jae-Ho Shin. Draft Genome Sequence and Annotation of the Insect Pathogenic Bacterium Xenorhabdus nematophila Strain C2-3, Isolated from Nematode Steinernema carpocapsae in the Republic of Korea, Genome announcement, Volume 3, 1 (2015) e01521-14

86) Ihsan Ullah, Abdul Latif Khan, Liaqat Ali, Abdur Rahim Khan, Muhammad Waqas, Javid Hussain, In-Jung Lee, and Jae-Ho Shin. Benzaldehyde as an Insecticidal, Antimicrobial, and Antioxidant Compound Produced by Photorhabdus temperata M1021, Journal of Microbiology, 2015, Feb. 53(2) 127-133

(2014)

83) Gun-Seok Park, Ji-Hun Chu, Sung-Jun Hong, Abdur Rahim Khan, Byung Kwon Jung, Ihsan Ullah, and Jae-Ho Shin, Complete genome sequence of the caprolactam-degrading bacterium Pseudomonas mosselii SJ10 isolated from wastewater of a nylon 6 production plant. Journal of Biotechnology, (2014) 192: 263-264

82) Ullah, I., Khan, A. L., Ali, L., Khan, A. R., Waqas, M., Lee, I. J., & Shin, J. H. (2014). An Insecticidal Compound Produced by an Insect-Pathogenic Bacterium Suppresses Host Defenses through Phenoloxidase Inhibition. Molecules, 19(12), 20913-20928. 2014.12.12.

81) Gun-Seok Park, Sung-Jun Hong, Chang-Hyun Lee, Abdur Rahim Khan, Ihsan Ullah, Byung Kwon Jung, JungBae Choi, Chang-Gi Back, Hee-Young Jung, Jae-Ho Shin, Draft Genome Sequence of Chryseobacterium sp. P1-3, a Keratinolytic Bacterium Isolated from the Poultry Waste. Genome Announcement, (2014)

80) Susan Krueger, Jae-Ho Shin, Joseph E. Curtis, Kenneth A. Rubinson and Zvi Kelman. The solution structure of full-length dodecameric MCM by SANS and molecular modeling. Proteins: Structure, Function, and Bioinformatics (2014) 10:2364

78) Abdur Rahim Khan · Ihsan Ullah · Abdul Latif Khan · Sung-Jun Hong · Muhammad Waqas · Gun-Seok Park · JungBae Choi · Byung-Kwon Jung · Man Park · In-Jung Lee · Jae-Ho Shin. Phytostabilization and Physicochemical Responses of Korean Ecotype Solanum nigrum L. to Cadmium Contamination. Water, Air, & Soil Pollution (2014) 225:2147

77) Abdul Khan, Jae-Ho Shin, Hee-Young Jung, In-Jung Lee,. Regulations of capsaicin synthesis in Capsicum annuum L by Penicillium resedanum LK6 during drought conditions. Scientia Horticulturae (2014) 175: 167-173

76) Ihsan Ullah, Abdur Rahim Khan, Byung Kwon Jung, Abdul Latif Khan, In-Jung Lee and Jae-Ho Shin. Gibberellins synthesized by the entomopathogenic bacterium, Photorhabdus temperata M1021 as one of the factors of rice plant growth promotion. Journal of Plant Interactions (2014) Vol 9. issue 1

75) Ihsan Ullah, Eun-Kyung Jang, Min-Sung Kim, Jin-Ho Shin, Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, Byung-Kwon Jung, JungBae Choi, YeongJun Park, Jae-Ho Shin. Identification and characterization of the insecticidal toxin “makes caterpillars floppy” in Photorhabdus temperata M1021 using a cosmid library. Toxins(2014) 6(7) 2024-2040

74) Hyun Kim, Young-Hyun You, Hyeokjun Yoon, Yeonggyo Seo, Ye-Eun Kim, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, and Jong-Guk Kim. Culturable Fungal Endophytes Isolated from the Roots of Coastal Plants Inhabiting Korean East Coast. Mycobiology. 2014 Jun;42(2):100-108

73) Sung-Jun Hong, Yun-Ha Lee, Abdur Rahim Khan, Ihsan Ullah, Changhee Lee, Choi Kyu Park and Jae-Ho Shin. Cloning, expression, and characterization of thermophilic L-asparaginase from Thermococcus kodakarensis KOD1. Journal of Basic Microbiology (2014).

72) Sunhee Lee, Gun-Seok Park, Jae-Ho Shin, and Changhee Lee, Complete Genome Sequence of New Variant of Porcine Epidemic Diarrhea Virus from South Korea. 2014.05.29. Genome Announcement

71) Ramalingam Radhakrishnan, Jae-Ho Shin, Yeon-Sik Choo, Jong-Guk Kim and In-Jung Lee. Studies on toxic effects of nitrogenous compound, putrescine and spermine on cucumber plant growth. Journal of Environmental Biology (2014) p. 247-251

70) Yoon-Ha Kim, Abdul Latif Khan, Duk-Hwan Kim, Seung-Yeol Lee, Kyung-Min Kim, Muhammad Waqas, Hee-Young Jung, Jae-Ho Shin, Jong-Guk Kim and In-Jung Lee. Silicon mitigates heavy metal stress by regulating P-type heavy metal ATPases, Oryza sativa low silicon genes, and endogenous phytohormones. BMC plant biology (2014) 14(13)

(2013)

68) Yu Na Lee, Choi-Kyu Park, Seong-Hee Kim, Du Sik Lee, Jae-Ho Shin and Changhee Lee. Characterization in vitro and in vivo of a novel porcine parainfluenza virus 5 isolate in Korea. Virus research (2013) 178(2) 423-429

67) Sang-Jae Lee, Yong-Jik Lee, Gun-Seok Park, Byoung-Chan Kim, Sang Jun Lee, Jae-Ho Shin, and Dong-Woo Lee. Draft Genome Sequence of a strictly anaerobic and extremely thermophilic bacterium Caldanaerobacter yonseiensis" Genome Announcement (2013) vol. 1 no. e00923-13

66) Abdul Latif Khan, Muhammad Waqas, Abdur Rahim Khan, Javid Hussain, Sang-Mo Kang, Syed Abdullah Gilani, Muhammad Hamayun, Jae-Ho Shin, Muhammad Kamran, Ahmed Al-Harrasi, Byung-Wook Yun, Muhammad Adnan, In-Jung Lee. Fungal endophyte Penicillium janthinellum LK5 improves growth of ABA-deficient tomato under salinity. World J Microbial Biotechnol (2013)

65) Gun-Seok Park, Abdur Rahim Khan, Sung-Jun Hong, Eun-Kyung Jang, Ihsan Ullah, Byung Kwon Jung, JungBae Choi, Na-Kyung Yoo, Keun-Joon Park and Jae-Ho Shin. Draft Genome Sequence of Entomopathogenic Bacterium Photorhabdus temperata Strain M1021, Isolated from Nematodes. Genome announcements (2013) 1(5)

62) Myeongeun Choe, Sung-Jun Hong, Jong-Hui Lim, Chang-Gi Back, Hee-Young Jung, In-Jung Lee, Jae-Ho Shin. Korean Paddy Soil Microbial Community Analysis Method Using Denaturing Gradient Gel Electrophoresis. J Appl Biol Chem (2013) 56(2), 95-100

61) Ihsan Ullah, Abdur Rahim Khan, Gun-Seok Park, Jong-Hui Lim, Muhammad Waqas, In-Jung Lee and Jae-Ho Shin. Analysis of phytohormones and phosphate solubilization in Photorhabdus spp. Food Sci.Biotechnol (2013) 22(S) 25-31

(2012)

59) Miae Kim, Young-Hyun You, Hyeokjun Yoon, Hyun Kim, Yeonggyo Seo, Irina Khalmuratova, Jae-Ho Shin, In-Jung Lee, Yeon-Sik Choo and Jong-Guk Kim. Genetic Diversity of Endophytic Fungal Strains Isolated from the Roots of Coastal Plants in Ulleung Island for Restoration of Coastal Ecosystem. Journal of Life Science 2012 Vol. 22. No. 10. 1384~1391

58) Jang, Eun-Kyung, Ihsan Ullah, Jong-Hui Lim, In-Jung Lee, Jong-Guk Kim, and Jae-Ho Shin. Physiological and Molecular Characterization of a Newly Identified Entomopathogenic Bacteria, Photorhabdus temperata M1021. J. Microbiol. Biotechnol. First Published Online (2012)22(12) 1605-1612

57) Young-Hyun You, Hyeokjun Yoon, Sang-Mo Kang, Ju-Ri Woo, Yeon-Sik Choo, In-Jung Lee, Jae-Ho Shin, Jong-Guk Kim, Cadophora malorum Cs-8-1 as a new fungal strain producing gibberellins isolated from Calystegia soldanella. Journal of Basic Microbiology. (2012) 52, 1–5 2012.09.07

56) Young-Hyun You, Hyeokjun Yoon, Sang-Mo Kang, Jae-Ho Shin, Yeon-Sik Choo, In-Jung Lee, Jin-Man Lee, and Jong-Guk Kim. Fungal Diversity and Plant Growth Promotion of Endophytic Fungi from Six Halophytes in Suncheon Bay J. Microbiol. Biotechnol. (2012) 22(11), 1550–1557 July 17.

54) Gun-Seok Park · Eun-Kyung Jang · Min-Sung Kim · Jae-Ho Shin. Insecticidal Activity and Stability by Freeze-drying of Entomopathogenic Bacteria, Photorhabdus temperata M1021. J Appl Biol Chem (2012) 55(2), 123-127

53) Sung-Jun Hong, Ihsan Ullah, Gun-Seok Park, Changhee Lee, and Jae-Ho Shin. Overexpression and Characterization of Recombinant Glutamate Decarboxylase from Thermococcus kodakaraensis KOD1. J. Korean Soc. Appl. Biol. Chem. 2012. 55, 213-218.

(2011)

52) Myeongeun Choe, In-Jung Lee, Jae-Ho Shin. Assessment of Korean paddy soil microbial community structure by use of quantitative real-time PCR assays. Korean J Environ. Agric. 2011. Dec 30, 30(4): 367-376.

51) Young-Hyun You, Hyeokjun Yoon, Ju-Ri Woo, Yeounggyo Seo, Jae-Ho Shin, Yeon-Sik Choo, In-Jung Lee, Jong-Guk Kim. Plant Growth Promotion Activity of Endophytic Fngi Isolated from the Roots of Calystegia soldanella. Korean J. Microbiol. Biotechnol. 2011. Dec 28, 39(4): 324-329.

50. S. Krueger, J.-H. Shin, S. Raghunandan, J. E. Curtis, and Z. Kelman. Atomistic Ensemble Modeling and SANS of Intrinsically Disordered Protein Complexes: Applied to MCM. Biophys J. 2011. Dec 21: 2999-3007

49. Abdul Latif Khan, Muhammad Hamayun, Ramalingam Radhakrishnan, Muhammad Waqas, Sang-Mo Kang, Yoon-Ha Kim, Jae-Ho Shin, Yeon-Sik Choo, Jong-Guk Kim and In-Jung Lee. Mutualistic association of Paecilomyces formosus LHL10 offers thermotolerance to Cucumis sativus. Antonie van Leeuwenhoek Journal of Microbiology. 2012. 101: 267-279

48. Eun-Kyung Jang, Ihsan Ullah, Min-Sung Kim, Kyeong-Yeoll Lee, Jae-Ho Shin. Isolation and characterization of the entomopathogenic bacterium, Photorhabdus temperata producing a heat stable insecticidal toxin. Jounal of plant diseases and protection. 2011. 118(5): 178-184

47. Young-Hyun You, Hyeokjun Yoon, Gil Seong Lee, Ju-Ri Woo, Jae-Ho Shin, In-Jung Lee, Soon-Ok Rim, Yeon-Sik Choo, Jong-Guk Kim. Diversity and Plant Growth-Promotion of Endophytic Fungi Isolated from the Roots of Plants in Dokdo Islands. Journal of Life Science 2011. Jul 21(7): 923-1066

46. Yam Kumar Shrestha, Eun-Kyung Jang, Yeon-Su Yu, Mijo Kwon, Jae-Ho Shin and Kyeong-Yeoll Lee. Oral toxicity of symbiotic bacteria Photorhabdus spp. against immature stages of insects. Journal of Asia-Pacific Entomology. 2010, Oct, 25.

45. Catherine W. Rico, Mi Young Kang, Jae-Ho Shin, and In Chul Um. Cholesterol-lowering Action and Antioxidative Effects of Microbial Gum in C57BL/6N Mice Fed a High Fat Diet. Biotechnol. Bioprocess Eng. 2011, Mar 16(1): 167-172.

(2010)

44. Kab-Sik Shin, Young-Hwan Jeon, Hyo-Young Kim, Jung-In Hwang, Sangman Lee, Jae-Ho Shin and Jang-Eok Kim. Degradation of Fungicide Tolclofos-methyl by Chemical Treatment. Korean J Environ. Agric. 2010. Dec 30, 29(4): 396-401.

42. Hyun-Ho Kim, Jai-Hyun So, Jae-Ho Shin, and In-Koo Rhee. Role of xylR Gene on the Construction of Xylose-Inducible Expression Vectors Using xylF Promoter of Escherichia coli. J. Korean Soc. Appl. Biol. Chem. 2010. Dec 30, 53(6): 790-797.

41. Jai-Hyun So, Won-Chan Kim, Jae-Ho Shin, Choon-Bal Yu and In-Koo Rhee. Purification and characterization of a β-glucosidase capable of hydrolyzing soybean isoflavone glycosides from Pichia guilliermondii K123-1. Food Science and Biotechnology. 2010, August, 8. 19(5): 1373-1379

40. JANG Eun-Kyung, SHIN Jae-Ho. Insecticidal Toxin and Research Trends of Photorhabdus, Entomopathogenic Bacteria. Korean Society for Microbiology and Biotechnology. 2010, 38 (2): 117-123.

39. Muhammad Hamayun, Sumera Afzal Khan, Abdul Latif Khan, Jae-Ho Shin, Bashir Ahmad, Dong-Hyun Shin and In-Jung Lee. Exogenous Gibberellic Acid Reprograms Soybean to Higher Growth and Salt Stress Tolerance. J. Agric. Food Chem. 2010, May 28, 58 (12): 7226–7232

(2009)

38. Zaw Win Min, Tae-Hwa Kim, Jae-Ho Shin, Sang-Man Lee, and Jang-Eok Kim. Accelerated Effect of Ferric Salts on Degradation of Thiophosphate Fungicide, Tolclofos-methyl by Zerovalent Iron. J. Kor. Soc. Appl. Biol. Chem, 2009, Dec 30, 52(6): 681-687.

37. Haim Yoon, Jang-Eok Kim, Jae-Ho Shin, Jeong Hoe Kim and Sangman Lee. Effect of Phytochelatin Synthase Expression on Degradation of Fungicide Tolclofosmethyl in Mutant Plant and Transformed yeast. Korean Journal of Environmental Agriculture, 2009, Dec 30; 28(4): 409-411.

36. Jai-Hyun So, Duk-Jin Kim, Jae-Ho Shin, Choon-Bal Yu and In-Koo Rhee. Isolation and Characterization of Bacillus cereus A-139 Producing Auxin from East Coast Sand Dunes. Korean Journal of Environmental Agriculture, 2009, Dec 30; 28(4): 447-452.

35. Won-Chan Kim, Jai-Hyun So, Sang-In Kim, Jae-Ho Shin, Kyung-Sik Song, Choon-Bal Yu, Yung-Hee Kho, and In-Koo Rhee. Isolation, Identification, and Characterization of Pichia guilliermondii K123-1 and Candida fermentati SI, Producing Isoflavone β-Glycosidase to Hydrolyze Isoflavone Glycoside Efficiently, from the Korean Traditional Soybean Paste. J. Appl. Biol. Chem., 2009, Dec; 52(4): 163-169.

34. Jin-Ho Shin, Eun-Jung Kim, Sun-Ji Park, In-Koo Rhee, and Jae-Ho Shin. Isolation and Production of Antibiotic Substance from Streptomyces sp. S-1110 Antagonistic to Multiple Apple Mold Diseases. Korean Journal of Environmental Agriculture, 2009, Sep 30; 28(3): 289-294.

33. Jae-Ho Shin, Jun-Ho Choi, Oh-Seuk Lee, Young-Mok Kim, Dong-Suk Lee, Yun-Young Kwak, Won-Chan Kim, and In-Koo Rhee. Thermostable Xylanase from Streptomyces thermocyaneoviolaceus for Optimal Production of Xylooligosaccharides. Biotehcnolology and Bioprocess Engineering, 2009, Aug 31; 14: 391-399.

32. Martin Samuels, Gaurav Gulati, Jae-Ho Shin, Rejoice Opara, Elizabeth McSweeney, Matt Sekedat, Stephen Long, Zvi Kelman, and David Jeruzalmi. A biochemically active MCM-like helicase in Bacillus cereus. Nucleic Acids Res., 2009 July; 37(13): 4441–4452

31. Michiyo Tanikawa, Tae Shin Kim, Kiyoshi Okuda, Zae Young Ryoo, Soo Bong Park, Jae Ho Shin, Choon Keun Park, and Dong Seok Lee. Cell-type specificity of interleukins 1α and 1β on prostaglandin and plasminogen activator production in bovine endometrial cells, Animal Reproduction Science, 2009, Aug 01; 114: 32-42.

30. Lam Hoang, Gil-Jae Joo, Won-Chan Kim, Eun-Ju Yang, Sang-In Kim, Sang-Man Lee, Jae-Ho Shin, In-Koo Rhee, and Kyung-Sik Song. Growth Inhibitors of Lettuce Seedlings from Curvibacter sp. GA75-1 Kor. J. Hort. Sci. Technol. 2009, Jun 1; 27(2):319-324.

29. Jae-Ho Shin, Gun-Young Heo and Zvi Kelman. The Methanothermobacter thermautotrophicus MCM helicase is active as a hexameric ring. Journal of Biological Chemistry, 2009, Jan 2; 284(1) 540-546.

(2008)

28. Jae-Ho Shin, Yunyoung Kwak, Won-Chan Kim, Jai-Hyun So, Hyun-Soo Shin, Jong-Woo Park, Tae-Hwa Kim, Jang-Eok Kim, and In-Koo Rhee. Isolation of endosulfan degrading bacteria and their degradation characteristics. Korean Journal of Environmental Agriculture, 2008, Sep 30; 27(3) 292-297

27. Jae-Ho Shin. Helicase translocation assay method using avidin and biotinylated nucleotides. Biotechnology Letters, 2008, Nov.01, 30(11):2007-2012

26. Andrea Farina, Jae-Ho Shin, Do-Hyung Kim, Vladimir P. Bermudez, Zvi Kelman, Yeon-Soo Seo, and Jerard Hurwitz. Studies with the human cohesin establishment factor, ChlR1; its association with CTF18-RFC and FEN1. Journal of Biological Chemistry, 2008, Jul 25; 283(30) 20925-20936.

25. Jae-Ho Shin, Gun-Young Heo, and Zvi Kelman. The Methanothermobacter thermautotrophicus Cdc6-2 proteins, the putative helicase loader, dissociate the MCM helicase. Journal of Bacteriology, 2008, June 190(11): 4091-4094.

24. Gun-Young Heo, Won-Chan Kim, Gil-Jae Joo, Yun-Young Kwak, Jae-Ho Shin, Dong-Hyun Roh, Heui-Dong Park, and In-Koo Rhee. Deletion of xylR Gene Enhances Expression of Xylose Isomerase in Streptomyces lividans TK24. Journal of Microbiology and Biotechnology. 2008. May 28; 18(5): 837-844.

(2007)

23. Jeong-Hwa Choi, Wan-Taek Im, Qing-Mei Liu, Jae-Soo Yoo, Jae-Ho Shin, Sung-Keun Rhee and Dong-Hyun Roh. Planococcus donghaensis sp. nov., a starchdegrading bacterium isolated from the East Sea, South Korea. International Journal of Systematic and Evolutionary Microbiology, 2007, Nov; 57:2645–2650.

22. Young-Mog Kim, Kunbawui Park, Won-Chan Kim, Jae-Ho Shin, Jang-Eok Kim, Heui-Dong Park and In-Koo Rhee. Cloning and Chracterization of a Catechol-Degrading Gene Cluster from 3,4-dichloroaniline Degrading Bacterium Pseudomonas sp. KB35B. Journal of Agricultural and Food Chemistry, 2007 Jun; 55:4722-4727

21. Jae-Ho Shin, Thomas J. Santangelo, Yunwei Xie, John N. Reeve and Zvi Kelman. Archaeal Minichromosome Maintenance (MCM) Helicase Can Unwind DNA Bound by Archaeal Histones and Transcription Factors. Journal of Biological Chemistry. 2007 Feb 16; 282(7):4908-15

(Before KNU until 2006)

20. Jae-Ho Shin and Zvi Kelman. DNA unwinding assay using streptavidin-bound oligonucleotides. BMC Molecular Biology. 2006 Nov 28; 7:43

19. Gyri Teien Haugland*, Jae-Ho Shin*, Nils-Kare Birkeland and Zvi Kelman. Stimulation of MCM helicase activity by a Cdc6 protein in the archaeon Thermoplasma acidophilum. Nucleic Acids Research. 2006 Nov 15; 34(21):6337-44. * These two authors contributed equally to this work

18. Jae-Ho Shin, and Zvi Kelman. The replicative helicases of bacteria, archaea and eukarya can unwind RNA-DNA hybrid substrates. Journal of Biological Chemistry. 2006 Sep 15; 281(37):26914-26921

17. Jae-Ho Shin, Rachel Mauro, Eugene Melamud and Rajesh Kasiviswanathan. Cloning and partial characterization of the Methanococcoides burtonii minichromosome maintenance (MCM) helicase. Bios. 2006 May; 77(2):37-41

16. Rajesh Kasiviswanathan, Jae-Ho Shin and Zvi Kelman. DNA Binding by the Methanothermobacter thermautotrophicus Cdc6 Protein Is Inhibited by the Minichromosome Maintenance Helicase. Journal of Bacteriology. 2006 Jun; 188(12):4577-4580

15. Jun-Ho Choi, Oh-Seuk Lee, Jae-Ho Shin, Yun-Young Kwak, Young-Mog Kim and In-Koo Rhee. Thermostable Xylanase Encoded by xynA of Streptomyces thermocyaneoviolaceus: Cloning, Purification, Characterization and Production of Xylooligosaccharides. Journal of Microbiology and Biotechnology. 2006 Jan 28; 16(1) 57-63

14. Rajesh Kasiviswanathan, Jae-Ho Shin and Zvi Kelman. Interaction between the archaeal Cdc6 and MCM proteins modulate their biochemical properties. Nucleic Acids Research. 2005 Sep 8; 33(15):4940-50

13. Gil-Jae Joo, Jae-Ho Shin, Gun-Young Heo, Young-Mog Kim and In-Koo Rhee. Molecular Cloning and Expression of a Thermostable Xylose (Glucose) Isomerase Gene, xylA, from Streptomyces chibaensis J-59. Journal of Microbiology. 2005 Feb; 43(1):34-37

12. Yen-Ju Chen, Xiong Yu, Rajesh Kasiviswanathan, Jae-Ho Shin, Zvi Kelman, and Edward H. Egelman. Structural polymorphism of Methanothermobacter thermautotrophicus MCM. Journal of Molecular Biology. 2005 Feb 18; 346(2):389-94

11. Jae-Ho Shin, John N. Reeve and Zvi Kelman. Use of a restriction enzyme-digested PCR product as substrate for helicase assays. Nucleic Acids Research. 2005 Jan 13; 33(1):e8

10. Kap Lim, Elif Sarikaya, Andrey Galkin, Wojciech Krajewski, Sadhana Pullalarevu, Jae-Ho Shin, Zvi Kelman, Andrew Howard, and Osnat Herzberg. Novel structure and nucleotide binding properties of HI1480 from Haemophilus influenzae: a protein with no known sequence homologues. Proteins: Structure, Function, and Bioinformatics. 2004 Aug 15; 56(3):564-71

9. Rajesh Kasiviswanathan, Jae-Ho Shin, Eugene Merlamud, and Zvi Kelman. Biochemical characterization of the Methanothermobacter thermautotrophicus minichromosome maintenance (MCM) helicase N-terminal domains. Journal of Biological Chemistry. 2004 Jul 2; 279(27):28358-66

8. Soo-Hyun Lee, Jae-Ho Shin, Jun-Ho Choi, Jong-Woo Park, Jang-Eok Kim, and In-Koo Rhee. Isolation and Chracterization of Chlorothalonil-dissipating Bacteria from Soil. Korean Journal of Microbiology and Biotechnology. 2004 Mar; 32(1):96-100

7. Jae-Ho Shin, Yun Jiang, Beatrice Grabowski, Jerard Hurwitz, and Zvi Kelman. Substrate requirements for duplex DNA translocation by the eukaryal and archaeal minichromosome maintenance helicases. Journal of Biological Chemistry. 2003 Dec 5; 278(49):49053-62

6. Jae-Ho Shin, Beatrice Grabowski, Rajesh Kasiviswanathan, Stephen D. Bell, and Zvi Kelman. Regulation of minichromosome maintenance helicase activity by Cdc6. Journal of Biological Chemistry. 2003 Sep 26; 278(39):38059-67

5. Jae-Ho Shin, Young-Mog Kim, Jong-Woo Park, Jang-Eok Kim, and In-Koo Rhee, Resistance of Saccharomyces cerevisiae to fungicide chlorothalonil. Journal of Microbiology. 2003 Sep; 41(3):219-223

4. Jae-Ho Shin, Dong-Hyun Roh, Gun-Young Heo, Gil-Jae Joo, and In-Koo Rhee. Purification and Characterization of a Regulatory Protein XylR in the D-xylose Operon from Escherichia coli. Journal of Microbiology and Biotechnology. 2001 Dec; 11(6):1002-1010

3. Gil-Jae Joo, Jae-Ho Shin, Gun-Young Heo, Yun-Young Kwak, Jun-Ho Choi, and In-Koo Rhee. Purification and Characterization of a Thermostable Xylose (Glucose) Isomerase from Streptomyces chibaensis J-59. Agricultural Chemistry and Biotechnology. 2001; 44:113-118

2. Seung-Hwan Kim, Oon-Chan Chung, Im-Sun Woo, Jae-Ho Shin, Dong-Hyun Rho, In-Koo Rhee, and Heui-Dong Park. Fermentation and Sporulation Characteristics of Saccharomyces cerevisiae SHY111 Isolated from Korean Traditional Rice Wine. Journal of Microbiology and Biotechnology. 2000; 10:776-783

1. Heui-Dong Park, Seung-Hwan Kim, Jae-Ho Shin, and In-Koo Rhee. Genetic Analysis of Alcohol Yeasts Isolated from Korean Traditional Liquor by Polymerase Chain Reaction. Journal of Microbiology and Biotechnology. 1999 Dec; 9(6):744-750

Book Chapters

1. Jae-Ho Shin, Lori Kelman, and Zvi Kelman. DNA replication in thermophiles. In Thermophiles : Biology and Technology at High Temperature ( Frank Robb, Garo Antranikian, Dennis Grogan, and Arnold Driessen eds.) Taylor & Francis CRC Press. 2007. ISBN: 9780849392146 link

2. 주우홍, 신재호 외. 미생물학입문 2판(번역). 월드사이언스, 2009. ISBN: 9788958811411

3. 주우홍, 신재호 외. 미생물학입문 3판(번역). 월드사이언스, 2013. ISBN: 9788958812227

4. 김병홍, 신재호 외. 미생물생리학 4판. 아카데미서적, 2013. ISBN: 9788976162724

5. 주우홍, 신재호 외. 미생물학입문 4판(번역). 월드사이언스, 2017. ISBN: 9788958812227

6. 주우홍, 신재호 외. 미생물학입문 5판(번역). 월드사이언스, 2022. ISBN: 9788958812227